CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 96     Density of SSR      : 1SSR/ 17.59 kb   Average length of SSR  : 14.39 bp
Coding      : 73     Non-Coding           : 21   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CTA)4126576Non coding
2. (GGT)4121666016671Coding
3. (GGC)4121669016701Coding
4. (GGC)4121690616917Coding
5. (GCA)4123450634517Non coding
6. (GGA)5155572855742Coding
7. (GAG)4127775377764Coding
8. (TAC)412240600240611Coding
9. (AAT)412300748300759Coding
10. (TTC)618337628337645Coding
11. (ACT)412368739368750Coding
12. (TGC)412407403407414Coding
13. (TTG)412467453467464Coding
14. (TCT)412512235512246Coding
15. (GCT)412515705515716Coding
16. (TTG)412607357607368Coding
17. (TAA)412655622655633Coding
18. (GCT)1030658784658813Coding
19. (GCT)412658847658858Coding
20. (TTC)412681385681396Coding
21. (TGA)412711777711788Non coding
22. (CAG)412716825716836Coding
23. (TTC)412726013726024Coding
24. (AGA)412795619795630Coding
25. (GAA)412830791830802Coding
26. (AGA)412864135864146Coding
27. (GGA)412915105915116Coding
28. (GGC)721999454999474Coding
29. (TCC)41210569801056991Coding
30. (TCC)41210768261076837Coding
31. (CTG)51510988971098911Coding
32. (GGA)41211102821110293Coding
33. (GCT)41212722481272259Coding
34. (AGA)41213062351306246Coding
35. (AGA)41213062921306303Coding
36. (ATC)41214346871434698Coding
37. (AGA)41214464141446425Coding
38. (AAC)41214899461489957Coding
39. (CAA)41214964481496459Coding
40. (TGC)41215440621544073Coding
41. (AAG)51515775321577546Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.