CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.34 kb   Average length of SSR  : 12.32 bp
Coding      : 1081     Non-Coding           : 136   Coding and Non-Coding : 41
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TAGA1140394049Coding
2. GGAT1252285239Coding
3. CTTT1270187029Coding
4. TTAA121715117162Coding-Non coding
5. AAAG111768817698Coding
6. TAAC112170021710Coding
7. GATA122211222123Coding
8. CCAT112679826808Coding
9. AGAA112704827058Coding
10. TTTC112768027690Coding
11. TCAG113260332613Non coding
12. CCAT123385633867Coding
13. AAAG113801238022Non coding
14. GAAT133817538187Coding
15. GATT124070740718Coding
16. ATTT134272042732Coding
17. CTTT124361843629Coding
18. GTTT124406244073Coding
19. TCCA124481144822Coding
20. CCAC115690456914Coding
21. ATGG135829058302Coding
22. TTGA136760567617Coding
23. AATT127111371124Coding
24. GGTT117209072100Coding
25. GACC127721777228Coding
26. CAAG117732877338Coding
27. TGGA118274982759Coding
28. GAAA118288782897Coding
29. GTTA118768087690Coding
30. AATT119113091140Coding
31. TCTT129909899109Non coding
32. GATT11101409101419Coding
33. AAAG11105477105487Coding
34. ATTG12105866105877Coding
35. TTAA12107744107755Coding-Non coding
36. AATT11108135108145Coding
37. AATT12109224109235Coding
38. ATGA13109918109930Coding
39. TTTA11121188121198Coding
40. TCTA11123031123041Coding
41. AAGC11123524123534Coding
42. GCTT12123686123697Non coding
43. TAGA12123919123930Coding
44. TGAA12125924125935Coding
45. TTTA12130722130733Coding
46. ATGA12132418132429Coding
47. CTTT12134459134470Coding
48. TGAG11135799135809Coding
49. ATGA12136562136573Coding
50. ATCG11145134145144Coding
51. GATT11145764145774Coding
52. GAAA11147783147793Coding
53. CAAT11149613149623Coding
54. CTTT11149926149936Coding
55. CATT11151043151053Coding-Non coding
56. AATT12152432152443Coding
57. ATTT12162199162210Non coding
58. ATGG11162997163007Coding
59. ATAA12163217163228Coding
60. CTTT11165143165153Coding
61. TCAC11166944166954Coding
62. ACTA11167069167079Coding
63. ACTT12167593167604Coding
64. TAAA11170206170216Coding
65. TTTA11170960170970Coding
66. AAAT12173678173689Coding-Non coding
67. AATG12174622174633Coding
68. ATTG11180524180534Coding
69. TCTA11181095181105Coding
70. TTGC12185240185251Coding
71. TAGT11187789187799Coding
72. GAGT12188868188879Coding
73. TAAA12195848195859Coding
74. GTCA12206352206363Coding
75. TGAC13207370207382Non coding
76. AGTT12210699210710Coding
77. AGTT12213879213890Coding-Non coding
78. TCCA11215449215459Coding
79. CTAA12216126216137Coding
80. CAGG11218926218936Coding
81. TTGA12219711219722Coding
82. TTTG12220731220742Coding
83. AGGA11229496229506Coding
84. AAAC11229943229953Coding
85. ATTG11234216234226Coding
86. AGAT12235008235019Coding
87. GTTT12235186235197Coding
88. TAAA11244772244782Non coding
89. TTGC12246596246607Coding
90. GAAA11248920248930Coding
91. CAAA16250038250053Coding
92. AATC12250288250299Coding
93. AAAT12251447251458Coding
94. AAGA11263449263459Coding
95. TTTC13268469268481Coding
96. AATT11269524269534Coding
97. TCAT12271202271213Coding
98. TTGG13274624274636Coding
99. AATT12281447281458Coding
100. ATTT17283461283477Non coding
101. AAGC12284770284781Coding
102. GCCT12286155286166Coding
103. AATT12288475288486Coding
104. ATGG11292422292432Coding
105. TTTC11294671294681Coding
106. ATAA13296135296147Coding-Non coding
107. ATTG13299074299086Coding
108. AAGC11303875303885Coding
109. GTGA16304492304507Non coding
110. GATT11307674307684Coding
111. ACTT11312990313000Coding
112. TTCA12313780313791Non coding
113. TTGC12316699316710Coding
114. TTGT12318944318955Coding
115. CTAT11319408319418Coding
116. CTTT17321286321302Coding
117. CAGC12321905321916Coding
118. TTCC11324820324830Coding
119. TGTT12328766328777Coding
120. AAGC12330489330500Coding
121. AAAG11340213340223Coding
122. TTGA11340252340262Coding
123. AGCG11344671344681Coding
124. TGAA11350118350128Coding
125. CTTT12358293358304Coding
126. CAAA12358791358802Non coding
127. GATA32358888358919Non coding
128. GAGC11360844360854Coding
129. CTTT12361661361672Coding
130. GATA12361950361961Non coding
131. AATT11372295372305Coding
132. TGAA12373887373898Coding
133. AGAT12378028378039Coding
134. AAAT11386383386393Coding
135. TTTG11386429386439Coding
136. TACC11387640387650Coding
137. TAGA13388524388536Coding
138. TACC11390176390186Coding
139. GATT13399599399611Coding
140. TGGG12401837401848Coding
141. TTTG11426649426659Coding
142. TTTG12428421428432Non coding
143. GGGA12431259431270Coding
144. ACAA11436922436932Coding
145. GCTT12444117444128Coding
146. TCTT13444611444623Coding
147. TGAT12448744448755Coding
148. TTAT11451017451027Coding-Non coding
149. TTGT12454094454105Non coding
150. GAAT12455450455461Coding
151. ATTG11457048457058Coding
152. TGAA11457672457682Coding-Non coding
153. TGGA12458446458457Coding
154. GCAA11461918461928Coding
155. TTGC12464616464627Coding
156. TTGA12464826464837Non coding
157. TTGC11469192469202Coding
158. TGAT11474269474279Coding
159. TTAA12480078480089Coding
160. TGCT12483282483293Coding
161. GTTG12485843485854Coding
162. TAAG11485906485916Coding
163. AGTT12494326494337Coding
164. CTTT12500988500999Coding
165. GGGA11503606503616Coding
166. ATTT12504050504061Coding-Non coding
167. TTAA11505478505488Coding
168. TCTA12507856507867Coding
169. TCTA13510632510644Coding
170. TTAA12514934514945Non coding
171. TTGC11516302516312Coding
172. AGTA11517063517073Coding
173. CATT11518982518992Non coding
174. TTAG13521943521955Coding
175. TCTG11525520525530Coding
176. GATT11526427526437Coding
177. AGCC12532134532145Coding
178. AAAT12534383534394Coding
179. ATGA12539043539054Coding
180. GGAA12540178540189Coding
181. TCCC12545312545323Coding
182. TACC11546444546454Coding
183. GTTT12556750556761Coding
184. TGAA12558040558051Coding-Non coding
185. TGTT12558854558865Non coding
186. CTTT11562786562796Non coding
187. AATT11567427567437Coding
188. AGCC11572747572757Coding
189. TTCT12574524574535Coding
190. AGCA12577520577531Coding
191. TCTT13582919582931Coding
192. TAGA12593600593611Coding
193. CAAT11605634605644Coding
194. GTCT11608600608610Coding
195. GATG12612124612135Coding
196. AAAT16612171612186Coding
197. GGCA11617858617868Coding
198. ACTC13619720619732Non coding
199. GTAT12620597620608Coding
200. ATTT11622110622120Non coding
201. TTGA11635384635394Non coding
202. ATTG11638197638207Coding
203. TTGA12640308640319Coding
204. ACTT13641472641484Coding
205. CAGC12643215643226Coding
206. CTTC12650820650831Coding
207. CTAT13652425652437Coding
208. TCAA12663608663619Coding-Non coding
209. TTTC11666058666068Coding
210. AAAG12669397669408Coding
211. CTAT11674548674558Coding
212. TGGG11674873674883Non coding
213. AACC12680502680513Coding
214. ATTT12680629680640Non coding
215. TAAT13681062681074Coding
216. AATG11684131684141Coding
217. CTAA12697920697931Coding
218. ATTT11700763700773Coding-Non coding
219. AGTC12703891703902Coding
220. TGCT11705766705776Coding
221. AATT11706503706513Coding
222. ATAG12707689707700Non coding
223. TTCC11712938712948Coding
224. ATTT13713042713054Coding
225. AGAA12719067719078Coding
226. TAGA11719681719691Coding
227. CTTA12720307720318Coding
228. ATCG12721916721927Coding
229. TTTA12724754724765Non coding
230. CAAA12727034727045Coding
231. TTGT16727120727135Coding
232. TTGT12727696727707Coding
233. TAGC11727893727903Coding-Non coding
234. CTAT11732827732837Coding
235. TTTA13739704739716Coding
236. TGAC11751316751326Coding
237. TACT11753805753815Coding
238. TTAA11755253755263Coding
239. GTCA12759694759705Coding
240. AAAT12763707763718Coding
241. AACT12766973766984Coding
242. GGTA11767925767935Coding
243. AATC12770100770111Coding
244. TGGA13771700771712Coding
245. AAAC11778023778033Coding
246. ATTT12782958782969Coding
247. CATT12783604783615Coding-Non coding
248. ATTT12784039784050Coding
249. GCCA12789519789530Coding
250. TCTA11792431792441Coding
251. TTTC11792586792596Coding
252. TATT11795634795644Coding
253. TTCA12796235796246Coding
254. TTAC11799043799053Coding
255. GATA11799061799071Coding
256. ATCA16808125808140Coding
257. TAGA11809212809222Coding
258. GGAA12817848817859Coding
259. TAAT11827187827197Non coding
260. ATCT11829852829862Coding
261. TAAA12830482830493Coding
262. AAGA11832563832573Coding
263. AATG11838245838255Coding
264. AGAA11842173842183Coding
265. ACAT12844758844769Non coding
266. TAAT11847131847141Coding-Non coding
267. ATAA12851189851200Non coding
268. AATT11856653856663Coding
269. CTTT12857046857057Coding
270. GGAG12864413864424Coding
271. AACT12865733865744Coding
272. CATT11871029871039Coding
273. CAAA11879583879593Coding
274. ACTC11881223881233Coding
275. AAAT13882220882232Non coding
276. TAGG11886123886133Non coding
277. TCAA11891787891797Coding
278. TTAA12894389894400Coding
279. CTAA11895899895909Coding
280. GAAT15903850903864Non coding
281. TTGT12904429904440Coding
282. AAAG11907574907584Coding
283. AGTA11907836907846Coding
284. AGAT11914105914115Coding
285. TTTA15920108920122Non coding
286. CTGG11924125924135Coding
287. ATCA11926871926881Coding
288. AACA11927652927662Coding
289. TAAC12928349928360Non coding
290. TTTC12928426928437Coding
291. CCAA13935723935735Coding
292. AAAT12943528943539Coding
293. CTAA11949126949136Coding
294. CTAT12953807953818Coding
295. AAGC13957563957575Coding
296. ATGC13966487966499Coding
297. ATAG12971437971448Coding
298. AGTT12972888972899Coding-Non coding
299. CCAA13974664974676Coding
300. TTCT11974765974775Coding
301. TTGC12975800975811Coding
302. AAAT12976795976806Non coding
303. AAAT13977357977369Coding
304. AATG12979210979221Coding
305. AGAA12982898982909Coding
306. ATAG11984027984037Coding
307. CCAA12984292984303Coding
308. AAAC12988528988539Coding
309. CTGG12988818988829Coding
310. AATT13998298998310Non coding
311. ACAA11999610999620Coding
312. GAAG1310002461000258Coding
313. AGCA1110061431006153Coding
314. AGAA1310077841007796Coding
315. AAGG1210118001011811Coding
316. GCTT1310211111021123Coding
317. AAAG1110273471027357Non coding
318. GTTA1110277971027807Non coding
319. CAAA1210297551029766Coding
320. ACCA1310311841031196Coding
321. ATTG1110391071039117Coding
322. AAAT1310398041039816Coding
323. GAAT1210454621045473Coding
324. AATA1210468341046845Coding
325. TTAC1210473651047376Coding
326. CTGA1110486651048675Coding
327. AATC1110522031052213Coding
328. TTTA1110527641052774Non coding
329. GATT1310543511054363Non coding
330. TTGT1110550201055030Non coding
331. TTGA1110578761057886Coding-Non coding
332. TTTA1210581291058140Non coding
333. GCCA1210585741058585Coding
334. ACCA1210611271061138Coding
335. CTAA1110614121061422Non coding
336. ATTA1310624311062443Non coding
337. CCTT1210675191067530Coding
338. CATT1110687211068731Non coding
339. CAAA1210717861071797Coding
340. CAAT1210723271072338Coding
341. CTTC1210737541073765Coding
342. TAGT1110751161075126Coding
343. ATGG1210755831075594Coding
344. AATC1210784701078481Coding
345. ATGA1210809731080984Non coding
346. CTTA1110818181081828Coding
347. GAAT1310828681082880Coding
348. TTTC1110847391084749Coding
349. TAGA1210854361085447Non coding
350. TTAA1210884171088428Non coding
351. CATT1110962531096263Coding
352. AAGC1110992751099285Coding
353. AATT1111064601106470Coding
354. CTGA1211138341113845Coding
355. TTCT1211149171114928Coding
356. ATAC1211152441115255Coding
357. ATTT1111196971119707Coding
358. TAAC1111203621120372Coding
359. AACA1211250531125064Non coding
360. AGAT1111276131127623Coding
361. AACT1111287561128766Non coding
362. TAAG1111299921130002Non coding
363. AAAG1111301681130178Coding
364. ATTT1111306851130695Coding
365. ATCA1111308791130889Non coding
366. GAAT1211445481144559Coding
367. ATTT1111446341144644Coding
368. AATT1211454081145419Coding
369. TAAG1311458621145874Coding
370. TTGA1211474041147415Coding
371. ATTT1211540291154040Coding
372. CAAT1111561431156153Coding
373. ATTA1211581141158125Coding
374. GAAA1111636851163695Coding
375. TTTA1311659531165965Coding
376. AAAC1111685071168517Coding
377. TCTT1111695901169600Coding
378. AGAA1211718181171829Coding
379. TGCA1311786021178614Coding
380. AGCA1211794691179480Coding
381. CTAG1111810461181056Coding
382. CTTT1111814461181456Coding
383. TTTC1111830181183028Coding
384. TCAA1211910691191080Coding
385. CAAA1111928991192909Coding
386. CCAA1111945031194513Coding
387. CCAA1311952491195261Coding
388. AAAG1211968391196850Coding-Non coding
389. GATG1312035491203561Coding
390. ACTC1112047751204785Coding
391. ATTC1112052351205245Coding
392. GCAA1212073651207376Coding
393. TGAA1112122661212276Coding
394. AATG1212155131215524Non coding
395. CTTA1112197801219790Coding
396. CCAA1212215711221582Coding
397. TTCA1112246361224646Coding
398. AATT1312251941225206Coding-Non coding
399. AGCT1112299931230003Coding
400. CCAA1212363521236363Coding
401. AAAG1112363941236404Coding
402. GCCT1212386151238626Coding
403. CATT1112387071238717Non coding
404. TTGT1212395581239569Non coding
405. ATTT1112403261240336Coding
406. AAAG1212449581244969Coding
407. GCAA1112484691248479Coding
408. GTAA1112552061255216Coding
409. TCAA1112566681256678Coding
410. AGAC1612730431273058Non coding
411. CAAT1312780731278085Coding
412. AAGA1212794201279431Coding
413. GCTA1112808911280901Non coding
414. ACAA1212840221284033Coding
415. CAAA1112892051289215Coding
416. GCCA1212901331290144Coding
417. ACCA1212908851290896Coding
418. TAAA1612982441298259Non coding
419. ATTA1212983991298410Coding
420. GCAA1312995561299568Coding
421. GTTT1313012981301310Coding
422. ATTA1213065681306579Non coding
423. CAAT1213066631306674Coding
424. TAAT1613073541307369Non coding
425. GTTC1313266861326698Coding
426. AACT1113311221331132Non coding
427. GATT1113332301333240Coding
428. ATTA1213339781333989Coding
429. TACC1213370631337074Coding
430. AAAT1113379941338004Coding
431. GAAT1113389841338994Coding
432. TGGA1213394511339462Coding
433. AAGA1213417811341792Non coding
434. TCTT1213437341343745Coding
435. ATAA1213515331351544Non coding
436. AAGG1213532921353303Coding
437. AATG1113602681360278Coding
438. CAAG1213650171365028Non coding
439. AAAG1113665591366569Coding
440. ACAT1213667061366717Coding
441. ATGG1213667301366741Coding
442. AGGG1113676951367705Non coding
443. GATA1613679691367984Non coding
444. TTTC1113688601368870Coding
445. ATTT1113806621380672Non coding
446. AAAC1213834151383426Coding
447. TTTC1313876381387650Coding
448. TTCC1113914701391480Coding
449. CTAC1113957031395713Coding
450. CAAA1213967101396721Coding
451. GCAA1213973981397409Coding
452. AAGC1213987051398716Coding
453. AATC1213996841399695Coding
454. ATCA1114102311410241Non coding
455. AAGG1114119811411991Coding
456. ATTC1214155581415569Coding
457. ATTC1114181631418173Coding
458. CCAG1214289241428935Coding
459. CCAT1114339831433993Coding
460. CTAA1114421631442173Coding
461. TCAA1114472941447304Coding
462. AATT1114474021447412Coding
463. AAAT1214536581453669Coding
464. AAGG1214564841456495Coding
465. AAAC1114600951460105Coding
466. TCAA1114601521460162Coding
467. AACG1114638111463821Coding
468. GTTT1314664761466488Coding
469. AATC1114672781467288Coding
470. GAAA1114703801470390Coding
471. TCAT1214762091476220Coding
472. CATT1314762851476297Coding
473. TTCA1214787811478792Coding
474. AATT1114843031484313Coding
475. TAAT1614858191485834Non coding
476. TGCC1214869771486988Coding
477. GCGA1114873481487358Coding
478. TCAA1314955831495595Coding-Non coding
479. TTTC1114965731496583Coding
480. AATT1614986911498706Coding-Non coding
481. GAAC1114994491499459Coding
482. GAAA1115061461506156Coding
483. AAAT1215062181506229Non coding
484. ATCA1215067351506746Coding
485. ACCC1115074711507481Coding
486. ATTA1215125751512586Coding-Non coding
487. GCTC1115193711519381Coding
488. TTTC1315260101526022Coding
489. CCAA1215288411528852Coding
490. CACG1115405301540540Coding
491. ATCG1215473781547389Coding
492. TAAT1315500671550079Coding
493. GCAA1115506931550703Coding
494. AGTG1115548071554817Coding
495. TTAA1115554661555476Non coding
496. TGAA1115560221556032Coding-Non coding
497. AATC1215568401556851Coding
498. TAGA1115574921557502Coding
499. GAAA1115661991566209Coding
500. ATCT1115665751566585Coding
501. AATT1115683681568378Non coding
502. ATTC1215703291570340Coding
503. TCAA1315723961572408Coding
504. ACTG1615811151581130Coding
505. ATGA1315881131588125Non coding
506. TGAA1115902241590234Coding
507. ATAG1215927921592803Coding
508. ATAG1115953131595323Coding
509. ATTT1215966551596666Coding
510. AAAT1215990151599026Coding-Non coding
511. CAGG1216119301611941Coding
512. CAAA1216185321618543Coding
513. TGAA1216239721623983Coding
514. AATT1216255031625514Coding-Non coding
515. GCAA1316309311630943Coding-Non coding
516. ATGC1116320241632034Coding
517. TCAA1216326031632614Coding
518. GATT1216414601641471Coding
519. CTGA1216421401642151Coding
520. TAAA1116497951649805Coding
521. ATAA1116510771651087Coding
522. GAAA1116539941654004Coding
523. TTAG1116589341658944Coding
524. AAAC1116591021659112Coding
525. AAAG1116633891663399Coding
526. ATCA1116730341673044Coding
527. AATC1116740031674013Coding
528. AATC1116806171680627Coding
529. AATT1216820651682076Coding
530. AAAT1116838921683902Coding
531. ACTG1116848001684810Coding
532. AGTA1116857841685794Coding
533. AATT1616878561687871Coding
534. GAAA1116886481688658Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.