CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9211 (NC_009976 1688964 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 96     Density of SSR      : 1SSR/ 17.59 kb   Average length of SSR  : 14.39 bp
Coding      : 73     Non-Coding           : 21   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 41 40 5 7 96
IMPERFECT 1 61 572 534 58 32 1258
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATGG)3121183811849Coding
2. (GAAA)3129386793878Coding
3. (CATT)312183650183661Coding
4. (TCTT)312221125221136Coding
5. (GCAA)312227941227952Coding
6. (TTTA)312231413231424Non coding
7. (ATTT)312283461283472Non coding
8. (GTGA)312304492304503Non coding
9. (CTTT)312321291321302Coding
10. (GATA)520358892358911Non coding
11. (ATTT)312444790444801Coding
12. (AAGA)520454314454333Non coding
13. (TTAA)416502905502920Non coding
14. (TTTG)312506362506373Coding
15. (GAAG)312552416552427Non coding
16. (CCAA)312594415594426Coding
17. (GAAT)312663734663745Coding
18. (TTCT)312702871702882Coding
19. (GCCA)312710972710983Coding
20. (TATT)312766655766666Coding
21. (AATT)312780510780521Coding
22. (AATT)312804828804839Non coding
23. (TTTA)312872068872079Non coding
24. (AAAG)31210475801047591Coding
25. (CAAG)31211911921191203Coding
26. (ATTA)31211926961192707Coding-Non coding
27. (AAGA)31211964461196457Coding
28. (AAAG)31212404981240509Coding
29. (AGAC)31212730431273054Non coding
30. (TTTC)31212756471275658Coding
31. (TAAA)31212887031288714Coding
32. (TAAA)31212982441298255Non coding
33. (GAAA)31213006931300704Non coding
34. (TAAT)31213073581307369Non coding
35. (TCTA)31213213671321378Non coding
36. (GATA)31213679691367980Non coding
37. (ATTT)31213936181393629Coding
38. (TAAT)31214858191485830Non coding
39. (CAAG)31215724221572433Coding
40. (TCAA)31216708071670818Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.