CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Prochlorococcus marinus str. MIT 9215 (NC_009840 1738791 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 152     Density of SSR      : 1SSR/ 11.36 kb   Average length of SSR  : 13.11 bp
Coding      : 106     Non-Coding           : 33   Coding and Non-Coding : 14
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 54 79 8 6 152
IMPERFECT 18 81 754 939 141 82 2015
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124758Non coding
2. (AAG)4126035460365Coding
3. (AATT)3126286962880Coding
4. (AGA)4126711667127Coding
5. (ATTT)3127266972680Coding
6. (TGA)4127397473985Coding
7. (AGA)4127571375724Coding
8. (TTTA)3127869978710Non coding
9. (AATT)3127909379104Coding-Non coding
10. (AT)6128003580046Coding
11. (TTTA)312105839105850Non coding
12. (TTA)412106748106759Coding
13. (TGT)412113345113356Coding
14. (AATT)312161193161204Coding-Non coding
15. (AAT)412177950177961Coding
16. (TAAT)312187708187719Non coding
17. (ATAA)312197555197566Coding
18. (TTGA)312207484207495Coding
19. (AATA)312237392237403Coding
20. (GCA)412252264252275Coding
21. (AGT)412255503255514Coding
22. (AAT)412257057257068Coding
23. (GAAA)312257218257229Coding
24. (ATT)412273319273330Coding
25. (ATTT)312277697277708Coding
26. (AAAT)312283053283064Coding
27. (TGC)721330317330337Coding
28. (TTGA)312336335336346Non coding
29. (GAT)515359544359558Coding
30. (CAT)412373107373118Coding
31. (ATC)412389527389538Coding
32. (CCA)412403567403578Coding
33. (CAG)412408868408879Coding
34. (CAG)412451196451207Coding
35. (AGAA)312452471452482Coding
36. (TTTA)312458987458998Non coding
37. (TCTG)312459873459884Coding
38. (GCA)515464620464634Coding
39. (AATT)312505118505129Coding-Non coding
40. (TAA)412524017524028Coding
41. (TTTG)312524936524947Coding
42. (TATT)312549459549470Non coding
43. (AGC)412553759553770Coding
44. (TAAA)312571807571818Coding
45. (TCTT)312579033579044Coding
46. (TAAT)312579849579860Non coding
47. (CAA)412586625586636Coding
48. (TTTC)312618712618723Coding
49. (GTTA)312620998621009Coding-Non coding
50. (AAAT)312637172637183Coding
51. (AAGA)312640385640396Coding
52. (ATTA)312661333661344Coding-Non coding
53. (ATTA)312709689709700Non coding
54. (TTCT)312712182712193Coding
55. (AATAAA)318722265722282Coding
56. (TTCT)312724271724282Coding
57. (ACA)412758236758247Coding
58. (AATTA)315761830761844Coding
59. (TTAT)312811342811353Coding-Non coding
60. (TA)612839994840005Non coding
61. (CAT)412848765848776Coding
62. (TTA)412890454890465Non coding
63. (TAAA)312894193894204Coding
64. (AATA)312897169897180Coding
65. (AGAA)312898657898668Coding
66. (ATT)412899476899487Coding
67. (TGC)412900581900592Coding
68. (TA)612907402907413Coding
69. (GAA)618909795909812Coding
70. (AAAT)312923488923499Coding
71. (ATG)412925519925530Coding
72. (TAA)412927078927089Non coding
73. (TAAA)312944465944476Non coding
74. (GTTTTT)742953519953560Coding
75. (ATT)412960594960605Non coding
76. (TATT)312966428966439Coding-Non coding
77. (TAAA)312969511969522Non coding
78. (TAA)412974359974370Non coding
79. (TAATT)420979645979664Non coding
80. (ATTT)312982096982107Non coding
81. (TATT)312982123982134Non coding
82. (AAAG)312982819982830Coding
83. (CAT)515986411986425Coding
84. (TCTT)312997892997903Coding
85. (ATT)412998082998093Coding
86. (CAATAT)31810252151025232Coding
87. (ATT)41210411451041156Coding
88. (TCT)41210593411059352Coding
89. (TAT)41210628971062908Coding
90. (CTG)51510719091071923Coding
91. (TAAA)31210763271076338Coding
92. (TTTA)31210933611093372Non coding
93. (TTGA)31210983831098394Coding
94. (TTAA)31211015301101541Non coding
95. (CATC)31211026101102621Coding
96. (A)131311065951106607Non coding
97. (TATT)31211176291117640Coding
98. (ATG)41211189861118997Non coding
99. (TAAT)41611219761121991Coding-Non coding
100. (TAATT)31511296761129690Non coding
101. (AATT)31211483791148390Coding
102. (CTG)41211495441149555Coding
103. (ATTT)31211517091151720Coding-Non coding
104. (TTAT)31211524171152428Non coding
105. (ATTT)31211748481174859Coding
106. (GCAAA)31511795421179556Coding
107. (TATC)31212264541226465Coding
108. (CAAA)31212295751229586Coding
109. (ATTT)31212298191229830Coding
110. (CTG)41212415671241578Coding
111. (ATTAAA)31812630541263071Coding
112. (AATA)31212688801268891Coding-Non coding
113. (CAG)41212943991294410Coding
114. (ATTA)31213148421314853Coding
115. (TTTA)31213209921321003Coding-Non coding
116. (AATT)31213267471326758Coding
117. (CTAT)31213385091338520Coding
118. (AATT)31213751281375139Coding
119. (TTTC)31213754171375428Coding
120. (TAT)41213799991380010Coding
121. (TTAG)31213846031384614Non coding
122. (CAT)41213850301385041Coding
123. (TTTA)31213857841385795Coding-Non coding
124. (AATT)31213908531390864Coding-Non coding
125. (AATA)31213994711399482Non coding
126. (TTTA)31214093571409368Coding
127. (ATC)41214138641413875Coding
128. (TAAA)31214143451414356Non coding
129. (AATT)31214200941420105Non coding
130. (AAAG)31214352661435277Non coding
131. (ATTT)31214746911474702Coding
132. (GCTTT)31514800241480038Coding
133. (TCAA)31214862691486280Coding
134. (AGATG)31515139251513939Non coding
135. (AAAT)31215281811528192Non coding
136. (AGC)41215502271550238Coding
137. (CTT)61815827901582807Coding
138. (TATT)31215935561593567Coding
139. (AATA)31216031901603201Coding
140. (ACATA)31516235311623545Coding
141. (A)121216337561633767Non coding
142. (AAAATT)31816341931634210Coding
143. (AGA)41216365421636553Coding
144. (AATT)31216570851657096Coding
145. (ATTTG)42016647961664815Coding
146. (AGA)41216757181675729Coding
147. (ACC)41216809691680980Coding
148. (TCT)41216910991691110Coding
149. (AAAT)31217085311708542Coding
150. (AGA)41217274281727439Coding
151. (ATGTAA)31817301421730159Coding
152. (GCA)51517378401737854Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.