CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9215 (NC_009840 1738791 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 152     Density of SSR      : 1SSR/ 11.36 kb   Average length of SSR  : 13.11 bp
Coding      : 106     Non-Coding           : 33   Coding and Non-Coding : 14
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 54 79 8 6 152
IMPERFECT 18 81 754 939 141 82 2015
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124758Non coding
2. (AAG)4126035460365Coding
3. (AGA)4126711667127Coding
4. (TGA)4127397473985Coding
5. (AGA)4127571375724Coding
6. (TTA)412106748106759Coding
7. (TGT)412113345113356Coding
8. (AAT)412177950177961Coding
9. (GCA)412252264252275Coding
10. (AGT)412255503255514Coding
11. (AAT)412257057257068Coding
12. (ATT)412273319273330Coding
13. (TGC)721330317330337Coding
14. (GAT)515359544359558Coding
15. (CAT)412373107373118Coding
16. (ATC)412389527389538Coding
17. (CCA)412403567403578Coding
18. (CAG)412408868408879Coding
19. (CAG)412451196451207Coding
20. (GCA)515464620464634Coding
21. (TAA)412524017524028Coding
22. (AGC)412553759553770Coding
23. (CAA)412586625586636Coding
24. (ACA)412758236758247Coding
25. (CAT)412848765848776Coding
26. (TTA)412890454890465Non coding
27. (ATT)412899476899487Coding
28. (TGC)412900581900592Coding
29. (GAA)618909795909812Coding
30. (ATG)412925519925530Coding
31. (TAA)412927078927089Non coding
32. (ATT)412960594960605Non coding
33. (TAA)412974359974370Non coding
34. (CAT)515986411986425Coding
35. (ATT)412998082998093Coding
36. (ATT)41210411451041156Coding
37. (TCT)41210593411059352Coding
38. (TAT)41210628971062908Coding
39. (CTG)51510719091071923Coding
40. (ATG)41211189861118997Non coding
41. (CTG)41211495441149555Coding
42. (CTG)41212415671241578Coding
43. (CAG)41212943991294410Coding
44. (TAT)41213799991380010Coding
45. (CAT)41213850301385041Coding
46. (ATC)41214138641413875Coding
47. (AGC)41215502271550238Coding
48. (CTT)61815827901582807Coding
49. (AGA)41216365421636553Coding
50. (AGA)41216757181675729Coding
51. (ACC)41216809691680980Coding
52. (TCT)41216910991691110Coding
53. (AGA)41217274281727439Coding
54. (GCA)51517378401737854Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.