CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9215 (NC_009840 1738791 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 152     Density of SSR      : 1SSR/ 11.36 kb   Average length of SSR  : 13.11 bp
Coding      : 106     Non-Coding           : 33   Coding and Non-Coding : 14
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 54 79 8 6 152
IMPERFECT 18 81 754 939 141 82 2015
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATT)3126286962880Coding
2. (ATTT)3127266972680Coding
3. (TTTA)3127869978710Non coding
4. (AATT)3127909379104Coding-Non coding
5. (TTTA)312105839105850Non coding
6. (AATT)312161193161204Coding-Non coding
7. (TAAT)312187708187719Non coding
8. (ATAA)312197555197566Coding
9. (TTGA)312207484207495Coding
10. (AATA)312237392237403Coding
11. (GAAA)312257218257229Coding
12. (ATTT)312277697277708Coding
13. (AAAT)312283053283064Coding
14. (TTGA)312336335336346Non coding
15. (AGAA)312452471452482Coding
16. (TTTA)312458987458998Non coding
17. (TCTG)312459873459884Coding
18. (AATT)312505118505129Coding-Non coding
19. (TTTG)312524936524947Coding
20. (TATT)312549459549470Non coding
21. (TAAA)312571807571818Coding
22. (TCTT)312579033579044Coding
23. (TAAT)312579849579860Non coding
24. (TTTC)312618712618723Coding
25. (GTTA)312620998621009Coding-Non coding
26. (AAAT)312637172637183Coding
27. (AAGA)312640385640396Coding
28. (ATTA)312661333661344Coding-Non coding
29. (ATTA)312709689709700Non coding
30. (TTCT)312712182712193Coding
31. (TTCT)312724271724282Coding
32. (TTAT)312811342811353Coding-Non coding
33. (TAAA)312894193894204Coding
34. (AATA)312897169897180Coding
35. (AGAA)312898657898668Coding
36. (AAAT)312923488923499Coding
37. (TAAA)312944465944476Non coding
38. (TATT)312966428966439Coding-Non coding
39. (TAAA)312969511969522Non coding
40. (ATTT)312982096982107Non coding
41. (TATT)312982123982134Non coding
42. (AAAG)312982819982830Coding
43. (TCTT)312997892997903Coding
44. (TAAA)31210763271076338Coding
45. (TTTA)31210933611093372Non coding
46. (TTGA)31210983831098394Coding
47. (TTAA)31211015301101541Non coding
48. (CATC)31211026101102621Coding
49. (TATT)31211176291117640Coding
50. (TAAT)41611219761121991Coding-Non coding
51. (AATT)31211483791148390Coding
52. (ATTT)31211517091151720Coding-Non coding
53. (TTAT)31211524171152428Non coding
54. (ATTT)31211748481174859Coding
55. (TATC)31212264541226465Coding
56. (CAAA)31212295751229586Coding
57. (ATTT)31212298191229830Coding
58. (AATA)31212688801268891Coding-Non coding
59. (ATTA)31213148421314853Coding
60. (TTTA)31213209921321003Coding-Non coding
61. (AATT)31213267471326758Coding
62. (CTAT)31213385091338520Coding
63. (AATT)31213751281375139Coding
64. (TTTC)31213754171375428Coding
65. (TTAG)31213846031384614Non coding
66. (TTTA)31213857841385795Coding-Non coding
67. (AATT)31213908531390864Coding-Non coding
68. (AATA)31213994711399482Non coding
69. (TTTA)31214093571409368Coding
70. (TAAA)31214143451414356Non coding
71. (AATT)31214200941420105Non coding
72. (AAAG)31214352661435277Non coding
73. (ATTT)31214746911474702Coding
74. (TCAA)31214862691486280Coding
75. (AAAT)31215281811528192Non coding
76. (TATT)31215935561593567Coding
77. (AATA)31216031901603201Coding
78. (AATT)31216570851657096Coding
79. (AAAT)31217085311708542Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.