CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9301 (NC_009091 1641880 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 136     Density of SSR      : 1SSR/ 11.98 kb   Average length of SSR  : 13.26 bp
Coding      : 103     Non-Coding           : 26   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 2 49 65 9 9 136
IMPERFECT 9 79 717 847 117 67 1836
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124758Non coding
2. (TTAT)3127485Non coding
3. (TAA)41291699180Coding
4. (GGA)5155174951763Coding
5. (AAG)4125808658097Coding
6. (AATT)3126559265603Coding
7. (AGA)4126983669847Coding
8. (ATTT)3127539875409Coding
9. (GAT)4127670176712Coding
10. (TTTA)3128142081431Non coding
11. (AATT)3128180481815Coding-Non coding
12. (ATTT)3128601786028Coding
13. (AATT)3128970289713Non coding
14. (TATT)312108568108579Non coding
15. (TGT)412116075116086Coding
16. (AATA)312148572148583Non coding
17. (ATATTG)318148872148889Coding
18. (ATTT)312181949181960Coding
19. (GCAAAA)318200470200487Coding
20. (ATAA)312201584201595Coding
21. (TTCT)312237403237414Coding
22. (AGC)412263136263147Coding
23. (ATTT)312280365280376Coding
24. (AAAT)312285718285729Coding
25. (AT)612290608290619Non coding
26. (TGC)824333021333044Coding
27. (ATTA)312335271335282Non coding
28. (TTGA)312339049339060Non coding
29. (AGC)412346846346857Coding
30. (TAAA)312364309364320Coding
31. (GCA)515412906412920Coding
32. (CCA)515426781426795Coding
33. (TGGC)312433351433362Coding
34. (ATTT)312442278442289Non coding
35. (TCA)412466251466262Coding
36. (AAAT)312471697471708Coding
37. (TAA)412472523472534Coding
38. (TTTG)312473443473454Coding
39. (AAAT)312520296520307Coding
40. (TAAT)312526904526915Non coding
41. (ATTA)312526931526942Non coding
42. (TTTC)312565775565786Coding
43. (TAGT)312568063568074Coding
44. (TAA)412577119577130Coding
45. (TTTC)312591008591019Coding
46. (ATTC)312599119599130Coding
47. (ATCACC)318601433601450Coding
48. (AGG)412602346602357Coding
49. (CTTT)312608254608265Coding
50. (TAA)515609368609382Coding
51. (ATTA)312626975626986Coding
52. (AGTAGA)636627575627610Coding
53. (AATT)312671646671657Coding
54. (TTCT)312678941678952Coding
55. (ATT)412692022692033Coding
56. (ATT)412693869693880Coding
57. (ATTTA)315750101750115Non coding
58. (TCCT)312763924763935Coding
59. (ATTA)312774412774423Non coding
60. (AATT)312779503779514Coding-Non coding
61. (TCA)412804127804138Coding
62. (GATT)312818581818592Non coding
63. (AATA)312822182822193Non coding
64. (GAT)412830468830479Coding
65. (TTGCT)315834570834584Coding
66. (AAAC)312845741845752Coding
67. (AAG)412845841845852Coding
68. (TTA)412857285857296Non coding
69. (TAAA)312861043861054Coding
70. (AATA)312864018864029Coding
71. (AGAA)312865505865516Coding
72. (TGC)412867429867440Coding
73. (TA)612874791874802Coding
74. (GAA)618877177877194Coding
75. (CAAAT)315884181884195Coding
76. (AAAT)312890371890382Coding
77. (ATG)412892402892413Coding
78. (TAA)412893962893973Non coding
79. (TAAA)312894225894236Coding
80. (AAAG)312898370898381Coding
81. (GCT)412908332908343Coding
82. (CTA)412914172914183Coding
83. (TTTTGT)318920421920438Coding
84. (TAAAAA)318923625923642Coding
85. (AATT)416925411925426Coding-Non coding
86. (ATT)412932558932569Non coding
87. (CTCTT)315944202944216Coding
88. (AAAG)312949877949888Coding
89. (CAT)412953499953510Coding
90. (TTTA)312957513957524Coding
91. (ATT)41210081551008166Coding
92. (TCT)41210263511026362Coding
93. (AAAGG)31510345991034613Coding
94. (A)151510415081041522Non coding
95. (AAAT)31210629741062985Coding
96. (TTAT)31210705211070532Coding
97. (TATT)31210791831079194Coding
98. (TTAT)31210948121094823Coding
99. (AGA)41211035411103552Coding
100. (CTG)51511169461116960Coding
101. (ATTT)31211191111119122Coding-Non coding
102. (TTA)41211202441120255Non coding
103. (ATTT)31211398261139837Coding
104. (TTTA)31211464141146425Coding
105. (CTC)41211774321177443Coding
106. (ATT)41211793641179375Coding
107. (AATT)31211857671185778Coding
108. (ATTA)31212036141203625Coding-Non coding
109. (ATTTT)31512493121249326Non coding
110. (TTTA)31212527131252724Coding-Non coding
111. (AATT)31212584601258471Coding
112. (AATA)31212647591264770Non coding
113. (AATT)31212674661267477Coding
114. (AATT)31213066581306669Coding
115. (AATT)31213223801322391Coding-Non coding
116. (TCA)41213224281322439Coding
117. (ATAAA)31513383111338325Non coding
118. (AAT)41213525771352588Coding
119. (ATTTTA)31814012051401222Coding
120. (AAT)41214236631423674Non coding
121. (CCAACT)31814643251464342Coding
122. (ATAAA)31514724071472421Non coding
123. (TTG)41214754421475453Coding
124. (CTT)61814859351485952Coding
125. (TATT)31214966991496710Coding
126. (A)121215367791536790Coding
127. (AGA)41215395681539579Coding
128. (TGC)41215588391558850Coding
129. (AATT)31215601131560124Coding
130. (TCT)41215658971565908Coding
131. (ATCAA)31515746991574713Coding
132. (AGA)41215787691578780Coding
133. (TCT)41215941591594170Coding
134. (AAAT)31216115961611607Coding
135. (TGTAAA)31816332321633249Coding
136. (CTG)51516409271640941Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.