CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9301 (NC_009091 1641880 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 136     Density of SSR      : 1SSR/ 11.98 kb   Average length of SSR  : 13.26 bp
Coding      : 103     Non-Coding           : 26   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 2 49 65 9 9 136
IMPERFECT 9 79 717 847 117 67 1836
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124758Non coding
2. (TAA)41291699180Coding
3. (GGA)5155174951763Coding
4. (AAG)4125808658097Coding
5. (AGA)4126983669847Coding
6. (GAT)4127670176712Coding
7. (TGT)412116075116086Coding
8. (AGC)412263136263147Coding
9. (TGC)824333021333044Coding
10. (AGC)412346846346857Coding
11. (GCA)515412906412920Coding
12. (CCA)515426781426795Coding
13. (TCA)412466251466262Coding
14. (TAA)412472523472534Coding
15. (TAA)412577119577130Coding
16. (AGG)412602346602357Coding
17. (TAA)515609368609382Coding
18. (ATT)412692022692033Coding
19. (ATT)412693869693880Coding
20. (TCA)412804127804138Coding
21. (GAT)412830468830479Coding
22. (AAG)412845841845852Coding
23. (TTA)412857285857296Non coding
24. (TGC)412867429867440Coding
25. (GAA)618877177877194Coding
26. (ATG)412892402892413Coding
27. (TAA)412893962893973Non coding
28. (GCT)412908332908343Coding
29. (CTA)412914172914183Coding
30. (ATT)412932558932569Non coding
31. (CAT)412953499953510Coding
32. (ATT)41210081551008166Coding
33. (TCT)41210263511026362Coding
34. (AGA)41211035411103552Coding
35. (CTG)51511169461116960Coding
36. (TTA)41211202441120255Non coding
37. (CTC)41211774321177443Coding
38. (ATT)41211793641179375Coding
39. (TCA)41213224281322439Coding
40. (AAT)41213525771352588Coding
41. (AAT)41214236631423674Non coding
42. (TTG)41214754421475453Coding
43. (CTT)61814859351485952Coding
44. (AGA)41215395681539579Coding
45. (TGC)41215588391558850Coding
46. (TCT)41215658971565908Coding
47. (AGA)41215787691578780Coding
48. (TCT)41215941591594170Coding
49. (CTG)51516409271640941Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.