CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9301 (NC_009091 1641880 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 136     Density of SSR      : 1SSR/ 11.98 kb   Average length of SSR  : 13.26 bp
Coding      : 103     Non-Coding           : 26   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 2 49 65 9 9 136
IMPERFECT 9 79 717 847 117 67 1836
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTAT)3127485Non coding
2. (AATT)3126559265603Coding
3. (ATTT)3127539875409Coding
4. (TTTA)3128142081431Non coding
5. (AATT)3128180481815Coding-Non coding
6. (ATTT)3128601786028Coding
7. (AATT)3128970289713Non coding
8. (TATT)312108568108579Non coding
9. (AATA)312148572148583Non coding
10. (ATTT)312181949181960Coding
11. (ATAA)312201584201595Coding
12. (TTCT)312237403237414Coding
13. (ATTT)312280365280376Coding
14. (AAAT)312285718285729Coding
15. (ATTA)312335271335282Non coding
16. (TTGA)312339049339060Non coding
17. (TAAA)312364309364320Coding
18. (TGGC)312433351433362Coding
19. (ATTT)312442278442289Non coding
20. (AAAT)312471697471708Coding
21. (TTTG)312473443473454Coding
22. (AAAT)312520296520307Coding
23. (TAAT)312526904526915Non coding
24. (ATTA)312526931526942Non coding
25. (TTTC)312565775565786Coding
26. (TAGT)312568063568074Coding
27. (TTTC)312591008591019Coding
28. (ATTC)312599119599130Coding
29. (CTTT)312608254608265Coding
30. (ATTA)312626975626986Coding
31. (AATT)312671646671657Coding
32. (TTCT)312678941678952Coding
33. (TCCT)312763924763935Coding
34. (ATTA)312774412774423Non coding
35. (AATT)312779503779514Coding-Non coding
36. (GATT)312818581818592Non coding
37. (AATA)312822182822193Non coding
38. (AAAC)312845741845752Coding
39. (TAAA)312861043861054Coding
40. (AATA)312864018864029Coding
41. (AGAA)312865505865516Coding
42. (AAAT)312890371890382Coding
43. (TAAA)312894225894236Coding
44. (AAAG)312898370898381Coding
45. (AATT)416925411925426Coding-Non coding
46. (AAAG)312949877949888Coding
47. (TTTA)312957513957524Coding
48. (AAAT)31210629741062985Coding
49. (TTAT)31210705211070532Coding
50. (TATT)31210791831079194Coding
51. (TTAT)31210948121094823Coding
52. (ATTT)31211191111119122Coding-Non coding
53. (ATTT)31211398261139837Coding
54. (TTTA)31211464141146425Coding
55. (AATT)31211857671185778Coding
56. (ATTA)31212036141203625Coding-Non coding
57. (TTTA)31212527131252724Coding-Non coding
58. (AATT)31212584601258471Coding
59. (AATA)31212647591264770Non coding
60. (AATT)31212674661267477Coding
61. (AATT)31213066581306669Coding
62. (AATT)31213223801322391Coding-Non coding
63. (TATT)31214966991496710Coding
64. (AATT)31215601131560124Coding
65. (AAAT)31216115961611607Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.