CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9303 (NC_008820 2682676 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 14.12 kb   Average length of SSR  : 13.39 bp
Coding      : 152     Non-Coding           : 31   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 93 70 6 19 190
IMPERFECT 0 80 1005 727 90 67 1969
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)41274107421Coding
2. (GGC)4121762417635Coding
3. (GGC)4121766017671Coding
4. (TGGT)3123632836339Coding
5. (TCGATT)3184057340590Coding
6. (TTG)4124441744428Coding
7. (GTGGGT)3185000050017Coding
8. (TGTT)3125570855719Coding-Non coding
9. (TGT)6186515765174Coding
10. (CGT)4126937669387Coding
11. (CTTG)3127433074341Coding
12. (AGT)4129995699967Coding
13. (TAGA)312111057111068Coding
14. (CAG)412131453131464Coding
15. (TCCC)312144872144883Coding
16. (TTGG)312145211145222Coding
17. (CCTGCT)318170532170549Coding
18. (GGAT)312186281186292Coding
19. (GCT)412195391195402Coding
20. (CTGCTT)530202806202835Coding
21. (GCG)515210118210132Coding
22. (GCAT)312226148226159Coding
23. (TTG)412249740249751Coding
24. (TTGG)312250629250640Coding
25. (GATCAG)318266360266377Coding
26. (TGAT)312287055287066Coding
27. (TGCT)312288594288605Coding
28. (TTGTT)420291732291751Non coding
29. (CG)714325780325793Coding
30. (TCA)412362904362915Coding
31. (CTT)618368046368063Non coding
32. (GATTCA)318369063369080Non coding
33. (CGAT)312387243387254Coding
34. (AGC)412392243392254Coding
35. (CAG)412402235402246Coding
36. (CCAAGT)424442314442337Coding
37. (CTGG)312448596448607Coding
38. (CTGGCC)318460550460567Coding
39. (CAG)412486833486844Coding
40. (TCAA)312507604507615Coding
41. (CAG)412511312511323Coding
42. (TCTT)416520574520589Non coding
43. (TTTG)312566026566037Coding
44. (CAG)412571765571776Coding
45. (ATTC)832589257589288Non coding
46. (CAAC)312592884592895Coding
47. (GCT)515608169608183Coding
48. (ATTG)312609391609402Coding
49. (GATA)312617946617957Coding
50. (GTT)515621815621829Non coding
51. (ATT)412622059622070Coding
52. (GAG)412628297628308Coding
53. (TGT)412631930631941Coding
54. (CAG)412659071659082Coding
55. (TGT)515668397668411Coding
56. (CTAG)312672122672133Non coding
57. (TGC)412711004711015Coding
58. (TTGA)312741965741976Coding-Non coding
59. (CAAG)312753502753513Coding
60. (AGAT)312763745763756Coding
61. (TCTT)312771582771593Coding
62. (GCG)412779798779809Coding
63. (GCC)412787784787795Coding
64. (ATGG)312794268794279Coding
65. (CAG)412801109801120Coding
66. (TGT)412812072812083Coding
67. (CTT)412819900819911Non coding
68. (TGTT)312822874822885Coding
69. (GTT)412842169842180Coding
70. (GCC)412843703843714Coding
71. (GGCGGT)318879985880002Coding
72. (GCA)412900256900267Coding
73. (GCA)515938827938841Coding
74. (TTGA)312947767947778Non coding
75. (GATT)312954794954805Coding
76. (ATC)412982211982222Coding
77. (ATTTT)315993678993692Non coding
78. (TTG)515994379994393Coding
79. (AGCT)31210137261013737Non coding
80. (CTCCAT)31810177991017816Non coding
81. (GTGA)31210208421020853Coding
82. (GCTA)41610403671040382Coding-Non coding
83. (AGT)41210563361056347Non coding
84. (CATGAC)42410648211064844Coding
85. (TGG)41211041851104196Coding
86. (CAG)41211151191115130Coding
87. (TTTC)31211608131160824Non coding
88. (CCA)41212028501202861Coding
89. (TTGC)31212274041227415Coding
90. (CGT)41212337121233723Coding
91. (TCA)41212533621253373Coding
92. (AAC)41212795061279517Non coding
93. (AGATC)31513009191300933Coding
94. (ACG)41213215201321531Coding
95. (ACAG)31213300871330098Coding
96. (GCAG)31213419701341981Coding
97. (GGAT)31213497831349794Non coding
98. (GGC)41213778741377885Coding
99. (TGGC)31214335201433531Coding
100. (GATT)31214878921487903Coding
101. (ATAG)31215000101500021Non coding
102. (GCT)51515151051515119Coding
103. (GCCA)31215292141529225Coding
104. (TGTA)31215490301549041Non coding
105. (TGAG)31215621931562204Coding-Non coding
106. (TGATAC)31815651921565209Non coding
107. (GTG)41215760281576039Coding
108. (GGAA)31215822441582255Coding
109. (GACTT)31515984791598493Coding
110. (CCCA)31216213561621367Coding
111. (CAA)41216470771647088Coding
112. (CCA)41216535531653564Coding
113. (CTG)41216564991656510Coding
114. (AATC)31216632441663255Coding
115. (TATT)31216754421675453Coding
116. (AATC)31216807231680734Coding
117. (CAC)41216846461684657Coding
118. (TTA)41216855651685576Non coding
119. (GTT)41216966421696653Coding
120. (GCA)41217004651700476Coding
121. (CAA)41217054941705505Coding
122. (AGC)51517140551714069Coding
123. (CAGC)31217174271717438Coding
124. (ACG)41217203321720343Coding
125. (CTG)41217299741729985Coding
126. (AGCA)31217367211736732Coding
127. (CGG)41217552791755290Coding
128. (CTGAG)31517582161758230Coding
129. (CTG)41217660061766017Coding
130. (TGTT)31217895371789548Non coding
131. (CTCA)31218067641806775Coding-Non coding
132. (TGG)41218079521807963Non coding
133. (AAC)51518386481838662Coding
134. (CAGC)31218396361839647Coding
135. (CTACGA)31818528451852862Coding
136. (ATCA)31218570421857053Coding
137. (GGT)41218757311875742Coding
138. (ATC)41218858391885850Coding
139. (TGAT)31219499221949933Non coding
140. (TTCG)31219523621952373Non coding
141. (ACCA)31219567051956716Non coding
142. (ATTC)31219713381971349Coding
143. (GCTCAA)31819863971986414Coding
144. (ATGCCA)31820693362069353Coding
145. (CAC)41220742772074288Coding
146. (GCC)41220768702076881Coding
147. (ATCC)31220793482079359Coding
148. (GCG)61820891542089171Coding
149. (AATG)31221014422101453Non coding
150. (CAA)41221524822152493Coding
151. (CTGG)31221751452175156Coding
152. (CAA)41221771492177160Coding
153. (CAC)41221838362183847Coding
154. (GCG)41221984322198443Coding
155. (CCAAAC)31822003312200348Non coding
156. (TCAA)31222021902202201Coding-Non coding
157. (TCAA)31222048772204888Coding-Non coding
158. (AGCG)31222190502219061Coding
159. (TGG)51522310522231066Coding
160. (TCA)41222420382242049Coding
161. (TGC)41222471502247161Coding
162. (CAT)41222630972263108Coding
163. (GAC)41222672002267211Coding
164. (GCA)41222739562273967Coding
165. (CAG)51523256712325685Coding
166. (CTG)41223352892335300Coding
167. (CAG)41223403202340331Coding
168. (CTG)41223463542346365Coding
169. (TCAC)31223702302370241Non coding
170. (GCC)41223754662375477Coding
171. (GCC)41224006742400685Coding
172. (CTG)51524143792414393Coding
173. (CTG)41224144292414440Coding
174. (GGCT)31224304212430432Non coding
175. (TCTT)31224347712434782Non coding
176. (GGTG)31224365332436544Coding
177. (CCTTGG)31824633912463408Coding
178. (ATC)41224808182480829Coding
179. (GCAT)31224897202489731Coding
180. (ATACCA)31825017242501741Coding
181. (CCG)61825041652504182Coding
182. (ACCA)31225732352573246Coding
183. (TTCAA)52526068962606920Non coding
184. (ACA)41226124302612441Coding
185. (GCT)41226243462624357Coding
186. (GA)61226265682626579Coding
187. (CTG)41226303432630354Coding
188. (CAA)41226358752635886Coding
189. (CACCAG)31826603262660343Coding
190. (CTG)51526816832681697Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.