CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9303 (NC_008820 2682676 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 14.12 kb   Average length of SSR  : 13.39 bp
Coding      : 152     Non-Coding           : 31   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 93 70 6 19 190
IMPERFECT 0 80 1005 727 90 67 1969
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)41274107421Coding
2. (GGC)4121762417635Coding
3. (GGC)4121766017671Coding
4. (TTG)4124441744428Coding
5. (TGT)6186515765174Coding
6. (CGT)4126937669387Coding
7. (AGT)4129995699967Coding
8. (CAG)412131453131464Coding
9. (GCT)412195391195402Coding
10. (GCG)515210118210132Coding
11. (TTG)412249740249751Coding
12. (TCA)412362904362915Coding
13. (CTT)618368046368063Non coding
14. (AGC)412392243392254Coding
15. (CAG)412402235402246Coding
16. (CAG)412486833486844Coding
17. (CAG)412511312511323Coding
18. (CAG)412571765571776Coding
19. (GCT)515608169608183Coding
20. (GTT)515621815621829Non coding
21. (ATT)412622059622070Coding
22. (GAG)412628297628308Coding
23. (TGT)412631930631941Coding
24. (CAG)412659071659082Coding
25. (TGT)515668397668411Coding
26. (TGC)412711004711015Coding
27. (GCG)412779798779809Coding
28. (GCC)412787784787795Coding
29. (CAG)412801109801120Coding
30. (TGT)412812072812083Coding
31. (CTT)412819900819911Non coding
32. (GTT)412842169842180Coding
33. (GCC)412843703843714Coding
34. (GCA)412900256900267Coding
35. (GCA)515938827938841Coding
36. (ATC)412982211982222Coding
37. (TTG)515994379994393Coding
38. (AGT)41210563361056347Non coding
39. (TGG)41211041851104196Coding
40. (CAG)41211151191115130Coding
41. (CCA)41212028501202861Coding
42. (CGT)41212337121233723Coding
43. (TCA)41212533621253373Coding
44. (AAC)41212795061279517Non coding
45. (ACG)41213215201321531Coding
46. (GGC)41213778741377885Coding
47. (GCT)51515151051515119Coding
48. (GTG)41215760281576039Coding
49. (CAA)41216470771647088Coding
50. (CCA)41216535531653564Coding
51. (CTG)41216564991656510Coding
52. (CAC)41216846461684657Coding
53. (TTA)41216855651685576Non coding
54. (GTT)41216966421696653Coding
55. (GCA)41217004651700476Coding
56. (CAA)41217054941705505Coding
57. (AGC)51517140551714069Coding
58. (ACG)41217203321720343Coding
59. (CTG)41217299741729985Coding
60. (CGG)41217552791755290Coding
61. (CTG)41217660061766017Coding
62. (TGG)41218079521807963Non coding
63. (AAC)51518386481838662Coding
64. (GGT)41218757311875742Coding
65. (ATC)41218858391885850Coding
66. (CAC)41220742772074288Coding
67. (GCC)41220768702076881Coding
68. (GCG)61820891542089171Coding
69. (CAA)41221524822152493Coding
70. (CAA)41221771492177160Coding
71. (CAC)41221838362183847Coding
72. (GCG)41221984322198443Coding
73. (TGG)51522310522231066Coding
74. (TCA)41222420382242049Coding
75. (TGC)41222471502247161Coding
76. (CAT)41222630972263108Coding
77. (GAC)41222672002267211Coding
78. (GCA)41222739562273967Coding
79. (CAG)51523256712325685Coding
80. (CTG)41223352892335300Coding
81. (CAG)41223403202340331Coding
82. (CTG)41223463542346365Coding
83. (GCC)41223754662375477Coding
84. (GCC)41224006742400685Coding
85. (CTG)51524143792414393Coding
86. (CTG)41224144292414440Coding
87. (ATC)41224808182480829Coding
88. (CCG)61825041652504182Coding
89. (ACA)41226124302612441Coding
90. (GCT)41226243462624357Coding
91. (CTG)41226303432630354Coding
92. (CAA)41226358752635886Coding
93. (CTG)51526816832681697Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.