CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9303 (NC_008820 2682676 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 190     Density of SSR      : 1SSR/ 14.12 kb   Average length of SSR  : 13.39 bp
Coding      : 152     Non-Coding           : 31   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 93 70 6 19 190
IMPERFECT 0 80 1005 727 90 67 1969
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGGT)3123632836339Coding
2. (TGTT)3125570855719Coding-Non coding
3. (CTTG)3127433074341Coding
4. (TAGA)312111057111068Coding
5. (TCCC)312144872144883Coding
6. (TTGG)312145211145222Coding
7. (GGAT)312186281186292Coding
8. (GCAT)312226148226159Coding
9. (TTGG)312250629250640Coding
10. (TGAT)312287055287066Coding
11. (TGCT)312288594288605Coding
12. (CGAT)312387243387254Coding
13. (CTGG)312448596448607Coding
14. (TCAA)312507604507615Coding
15. (TCTT)416520574520589Non coding
16. (TTTG)312566026566037Coding
17. (ATTC)832589257589288Non coding
18. (CAAC)312592884592895Coding
19. (ATTG)312609391609402Coding
20. (GATA)312617946617957Coding
21. (CTAG)312672122672133Non coding
22. (TTGA)312741965741976Coding-Non coding
23. (CAAG)312753502753513Coding
24. (AGAT)312763745763756Coding
25. (TCTT)312771582771593Coding
26. (ATGG)312794268794279Coding
27. (TGTT)312822874822885Coding
28. (TTGA)312947767947778Non coding
29. (GATT)312954794954805Coding
30. (AGCT)31210137261013737Non coding
31. (GTGA)31210208421020853Coding
32. (GCTA)41610403671040382Coding-Non coding
33. (TTTC)31211608131160824Non coding
34. (TTGC)31212274041227415Coding
35. (ACAG)31213300871330098Coding
36. (GCAG)31213419701341981Coding
37. (GGAT)31213497831349794Non coding
38. (TGGC)31214335201433531Coding
39. (GATT)31214878921487903Coding
40. (ATAG)31215000101500021Non coding
41. (GCCA)31215292141529225Coding
42. (TGTA)31215490301549041Non coding
43. (TGAG)31215621931562204Coding-Non coding
44. (GGAA)31215822441582255Coding
45. (CCCA)31216213561621367Coding
46. (AATC)31216632441663255Coding
47. (TATT)31216754421675453Coding
48. (AATC)31216807231680734Coding
49. (CAGC)31217174271717438Coding
50. (AGCA)31217367211736732Coding
51. (TGTT)31217895371789548Non coding
52. (CTCA)31218067641806775Coding-Non coding
53. (CAGC)31218396361839647Coding
54. (ATCA)31218570421857053Coding
55. (TGAT)31219499221949933Non coding
56. (TTCG)31219523621952373Non coding
57. (ACCA)31219567051956716Non coding
58. (ATTC)31219713381971349Coding
59. (ATCC)31220793482079359Coding
60. (AATG)31221014422101453Non coding
61. (CTGG)31221751452175156Coding
62. (TCAA)31222021902202201Coding-Non coding
63. (TCAA)31222048772204888Coding-Non coding
64. (AGCG)31222190502219061Coding
65. (TCAC)31223702302370241Non coding
66. (GGCT)31224304212430432Non coding
67. (TCTT)31224347712434782Non coding
68. (GGTG)31224365332436544Coding
69. (GCAT)31224897202489731Coding
70. (ACCA)31225732352573246Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.