CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9312 (NC_007577 1709205 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 9.88 kb   Average length of SSR  : 13.23 bp
Coding      : 111     Non-Coding           : 50   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 5 64 78 10 10 173
IMPERFECT 16 89 769 906 128 70 1978
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4128091Non coding
2. (TTTA)312108119Non coding
3. (TGGCGG)5301641316442Coding
4. (GGA)5154859348607Coding
5. (AAG)4125493254943Coding
6. (AATT)3125729257303Coding
7. (AGA)4126153761548Coding
8. (TATT)3128831388324Coding
9. (ATT)4129554695557Coding
10. (TAT)412123412123423Non coding
11. (ATTT)312171722171733Coding
12. (TAAT)312180628180639Coding-Non coding
13. (TAAT)312181510181521Non coding
14. (AGAT)312183467183478Coding-Non coding
15. (AAGCAA)318190245190262Coding
16. (TAAAT)315214595214609Coding-Non coding
17. (CCAAAA)318216171216188Coding
18. (A)1212223648223659Non coding
19. (ATGA)312229029229040Coding
20. (AATT)416230377230392Non coding
21. (ATT)412267103267114Coding
22. (ATTT)312271220271231Coding
23. (AAAT)312276574276585Coding
24. (AGC)412300101300112Coding
25. (ATGA)312324560324571Coding
26. (TGC)412327996328007Non coding
27. (AAAT)312336517336528Coding-Non coding
28. (AGC)412341840341851Coding
29. (A)1717342801342817Coding-Non coding
30. (ATTA)312344266344277Coding-Non coding
31. (ACAA)312352895352906Coding
32. (ACA)412357254357265Coding
33. (CCA)412361977361988Coding
34. (CAG)412367283367294Coding
35. (ATCA)312367477367488Coding
36. (GAA)412368669368680Coding
37. (CAG)618382203382220Coding
38. (CAG)412409647409658Coding
39. (ATTT)312445985445996Non coding
40. (AATT)416463764463779Coding-Non coding
41. (GAT)412478352478363Coding
42. (TAA)412482652482663Coding
43. (TTTG)312483573483584Coding
44. (TAAT)312497282497293Non coding
45. (ATTGAA)318499754499771Coding
46. (TAAT)312537060537071Non coding
47. (TAA)412551852551863Coding
48. (TACT)312568181568192Coding
49. (AATT)312576107576118Coding
50. (AGTT)312578412578423Coding-Non coding
51. (GTT)412585094585105Coding
52. (TTTC)312601383601394Coding
53. (TTAT)312604487604498Coding
54. (ATTC)312609499609510Coding
55. (TAA)412620481620492Non coding
56. (AT)612622155622166Coding
57. (TCA)412648134648145Non coding
58. (TAAC)520654243654262Non coding
59. (AAAT)520655523655542Non coding
60. (TTCT)312683842683853Coding
61. (ATT)412696918696929Coding
62. (A)1212732759732770Coding
63. (ATTTA)315755017755031Non coding
64. (ATTA)312755036755047Non coding
65. (AAT)412791893791904Coding
66. (AAATC)315799832799846Non coding
67. (AT)816811619811634Non coding
68. (GAT)412835277835288Coding
69. (AAAC)312850544850555Coding
70. (AAG)412850644850655Coding
71. (AAAT)312853393853404Coding
72. (TTA)412862089862100Non coding
73. (AAT)412863898863909Coding
74. (TAAA)312865831865842Coding
75. (AGAA)312870289870300Coding
76. (TGC)412872213872224Coding
77. (A)1919876372876390Non coding
78. (TA)612878349878360Coding
79. (TAA)412878403878414Coding
80. (GAA)618880739880756Coding
81. (TAA)412885386885397Coding
82. (AAAT)312893928893939Coding
83. (ATG)412895962895973Non coding
84. (TAA)412897525897536Non coding
85. (TTCATT)318917820917837Coding
86. (AATT)312921355921366Coding-Non coding
87. (ATAA)312929596929607Non coding
88. (TCA)412938053938064Coding
89. (AAT)412938305938316Non coding
90. (AAT)412945025945036Non coding
91. (AAAT)312947161947172Non coding
92. (AAAG)312952722952733Non coding
93. (CAT)412956351956362Coding
94. (ATATCA)318995163995180Coding
95. (CTT)412998531998542Coding
96. (A)151510030511003065Non coding
97. (CTAC)31210041591004170Coding
98. (ATT)41210286941028705Coding
99. (TCT)41210292231029234Coding
100. (AATT)31210428821042893Coding-Non coding
101. (AATTT)31510475761047590Non coding
102. (TTA)41210487131048724Coding
103. (ACCC)31210503411050352Coding
104. (GGCGGT)31810524231052440Coding
105. (AGAA)31210594201059431Non coding
106. (ATCC)31210605741060585Coding
107. (TTGA)31210703831070394Coding
108. (AAT)41210794341079445Coding
109. (TAAT)31210836161083627Non coding
110. (ATTTT)31510966171096631Coding
111. (AAAAAG)31811109391110956Coding
112. (ATT)41211218841121895Coding
113. (AATT)31211245351124546Non coding
114. (TATT)31211263261126337Coding
115. (ATG)41211292151129226Non coding
116. (GAT)41211292291129240Non coding
117. (TTAT)31211431671143178Coding
118. (A)141411455971145610Non coding
119. (AATT)31211572461157257Coding
120. (ATTT)31211605761160587Coding
121. (TTA)41211617071161718Non coding
122. (TTAA)31211795571179568Non coding
123. (ATTT)31212336041233615Non coding
124. (TAAA)31212485441248555Coding
125. (TAAA)31212529591252970Coding
126. (TGA)41212651071265118Coding
127. (TTTA)31212654871265498Coding
128. (CAA)41212914981291509Coding
129. (TAA)41213021681302179Coding
130. (ATTA)62413032691303292Coding-Non coding
131. (ATTTT)31513060121306026Non coding
132. (AATT)31213151751315186Coding
133. (CTAT)31213277511327762Coding
134. (AAT)41213722871372298Coding
135. (AATT)31213789161378927Non coding
136. (TCA)41213789641378975Non coding
137. (TACT)41613807821380797Non coding
138. (ATT)41213833151383326Coding
139. (TATT)31213852801385291Non coding
140. (AAAT)31213925671392578Non coding
141. (TTTA)31213930851393096Non coding
142. (TTTAA)42013940621394081Non coding
143. (TAAA)72813981321398159Non coding
144. (TTTA)31214026211402632Coding
145. (ATTT)41614088951408910Non coding
146. (TAAA)31214183681418379Coding-Non coding
147. (GCTTT)31514526321452646Coding
148. (CT)61214797951479806Coding
149. (AATT)31214800411480052Coding
150. (GAA)41214820411482052Coding
151. (ATAA)31215013951501406Non coding
152. (TTTA)31215074951507506Coding
153. (AAGG)31215084261508437Coding
154. (AAT)41215110391511050Coding
155. (TCCAAC)31815309621530979Coding
156. (ATAAA)31515390481539062Non coding
157. (TCT)61815525791552596Coding
158. (TATT)31215633421563353Coding
159. (ACATA)31515939231593937Coding
160. (AATT)31215964711596482Coding
161. (AAAATT)31816046161604633Coding
162. (AGA)41216069651606976Coding
163. (AT)61216129821612993Coding
164. (TCT)41216332811633292Coding
165. (AGA)41216461391646150Coding
166. (ATT)41216508651650876Coding
167. (CAG)41216530961653107Coding
168. (TCT)41216615211661532Coding
169. (AAAT)31216789481678959Coding
170. (AATC)31216870451687056Coding
171. (AGA)41216978711697882Coding
172. (TTGA)31217046821704693Coding
173. (CTG)51517082851708299Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.