CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9312 (NC_007577 1709205 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 9.88 kb   Average length of SSR  : 13.23 bp
Coding      : 111     Non-Coding           : 50   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 5 64 78 10 10 173
IMPERFECT 16 89 769 906 128 70 1978
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4128091Non coding
2. (GGA)5154859348607Coding
3. (AAG)4125493254943Coding
4. (AGA)4126153761548Coding
5. (ATT)4129554695557Coding
6. (TAT)412123412123423Non coding
7. (ATT)412267103267114Coding
8. (AGC)412300101300112Coding
9. (TGC)412327996328007Non coding
10. (AGC)412341840341851Coding
11. (ACA)412357254357265Coding
12. (CCA)412361977361988Coding
13. (CAG)412367283367294Coding
14. (GAA)412368669368680Coding
15. (CAG)618382203382220Coding
16. (CAG)412409647409658Coding
17. (GAT)412478352478363Coding
18. (TAA)412482652482663Coding
19. (TAA)412551852551863Coding
20. (GTT)412585094585105Coding
21. (TAA)412620481620492Non coding
22. (TCA)412648134648145Non coding
23. (ATT)412696918696929Coding
24. (AAT)412791893791904Coding
25. (GAT)412835277835288Coding
26. (AAG)412850644850655Coding
27. (TTA)412862089862100Non coding
28. (AAT)412863898863909Coding
29. (TGC)412872213872224Coding
30. (TAA)412878403878414Coding
31. (GAA)618880739880756Coding
32. (TAA)412885386885397Coding
33. (ATG)412895962895973Non coding
34. (TAA)412897525897536Non coding
35. (TCA)412938053938064Coding
36. (AAT)412938305938316Non coding
37. (AAT)412945025945036Non coding
38. (CAT)412956351956362Coding
39. (CTT)412998531998542Coding
40. (ATT)41210286941028705Coding
41. (TCT)41210292231029234Coding
42. (TTA)41210487131048724Coding
43. (AAT)41210794341079445Coding
44. (ATT)41211218841121895Coding
45. (ATG)41211292151129226Non coding
46. (GAT)41211292291129240Non coding
47. (TTA)41211617071161718Non coding
48. (TGA)41212651071265118Coding
49. (CAA)41212914981291509Coding
50. (TAA)41213021681302179Coding
51. (AAT)41213722871372298Coding
52. (TCA)41213789641378975Non coding
53. (ATT)41213833151383326Coding
54. (GAA)41214820411482052Coding
55. (AAT)41215110391511050Coding
56. (TCT)61815525791552596Coding
57. (AGA)41216069651606976Coding
58. (TCT)41216332811633292Coding
59. (AGA)41216461391646150Coding
60. (ATT)41216508651650876Coding
61. (CAG)41216530961653107Coding
62. (TCT)41216615211661532Coding
63. (AGA)41216978711697882Coding
64. (CTG)51517082851708299Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.