CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Prochlorococcus marinus str. MIT 9312 (NC_007577 1709205 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 9.88 kb   Average length of SSR  : 13.23 bp
Coding      : 111     Non-Coding           : 50   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 6 5 64 78 10 10 173
IMPERFECT 16 89 769 906 128 70 1978
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTA)312108119Non coding
2. (AATT)3125729257303Coding
3. (TATT)3128831388324Coding
4. (ATTT)312171722171733Coding
5. (TAAT)312180628180639Coding-Non coding
6. (TAAT)312181510181521Non coding
7. (AGAT)312183467183478Coding-Non coding
8. (ATGA)312229029229040Coding
9. (AATT)416230377230392Non coding
10. (ATTT)312271220271231Coding
11. (AAAT)312276574276585Coding
12. (ATGA)312324560324571Coding
13. (AAAT)312336517336528Coding-Non coding
14. (ATTA)312344266344277Coding-Non coding
15. (ACAA)312352895352906Coding
16. (ATCA)312367477367488Coding
17. (ATTT)312445985445996Non coding
18. (AATT)416463764463779Coding-Non coding
19. (TTTG)312483573483584Coding
20. (TAAT)312497282497293Non coding
21. (TAAT)312537060537071Non coding
22. (TACT)312568181568192Coding
23. (AATT)312576107576118Coding
24. (AGTT)312578412578423Coding-Non coding
25. (TTTC)312601383601394Coding
26. (TTAT)312604487604498Coding
27. (ATTC)312609499609510Coding
28. (TAAC)520654243654262Non coding
29. (AAAT)520655523655542Non coding
30. (TTCT)312683842683853Coding
31. (ATTA)312755036755047Non coding
32. (AAAC)312850544850555Coding
33. (AAAT)312853393853404Coding
34. (TAAA)312865831865842Coding
35. (AGAA)312870289870300Coding
36. (AAAT)312893928893939Coding
37. (AATT)312921355921366Coding-Non coding
38. (ATAA)312929596929607Non coding
39. (AAAT)312947161947172Non coding
40. (AAAG)312952722952733Non coding
41. (CTAC)31210041591004170Coding
42. (AATT)31210428821042893Coding-Non coding
43. (ACCC)31210503411050352Coding
44. (AGAA)31210594201059431Non coding
45. (ATCC)31210605741060585Coding
46. (TTGA)31210703831070394Coding
47. (TAAT)31210836161083627Non coding
48. (AATT)31211245351124546Non coding
49. (TATT)31211263261126337Coding
50. (TTAT)31211431671143178Coding
51. (AATT)31211572461157257Coding
52. (ATTT)31211605761160587Coding
53. (TTAA)31211795571179568Non coding
54. (ATTT)31212336041233615Non coding
55. (TAAA)31212485441248555Coding
56. (TAAA)31212529591252970Coding
57. (TTTA)31212654871265498Coding
58. (ATTA)62413032691303292Coding-Non coding
59. (AATT)31213151751315186Coding
60. (CTAT)31213277511327762Coding
61. (AATT)31213789161378927Non coding
62. (TACT)41613807821380797Non coding
63. (TATT)31213852801385291Non coding
64. (AAAT)31213925671392578Non coding
65. (TTTA)31213930851393096Non coding
66. (TAAA)72813981321398159Non coding
67. (TTTA)31214026211402632Coding
68. (ATTT)41614088951408910Non coding
69. (TAAA)31214183681418379Coding-Non coding
70. (AATT)31214800411480052Coding
71. (ATAA)31215013951501406Non coding
72. (TTTA)31215074951507506Coding
73. (AAGG)31215084261508437Coding
74. (TATT)31215633421563353Coding
75. (AATT)31215964711596482Coding
76. (AAAT)31216789481678959Coding
77. (AATC)31216870451687056Coding
78. (TTGA)31217046821704693Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.