CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9313 (NC_005071 2410874 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 169     Density of SSR      : 1SSR/ 14.27 kb   Average length of SSR  : 13.59 bp
Coding      : 140     Non-Coding           : 25   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 1 87 56 7 14 169
IMPERFECT 2 67 880 621 88 55 1713
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)41273797390Coding
2. (GGC)5151753617550Coding
3. (GGC)4121756017571Coding
4. (TGG)4122805528066Coding
5. (TGGT)3123628936300Non coding
6. (TCGATT)3184053540552Coding
7. (TGC)5154241442428Coding
8. (TTG)4124437044381Coding
9. (GTGGGT)3184908749104Coding
10. (GTG)4125926959280Coding
11. (CGT)4126465364664Coding
12. (CAGT)312100748100759Coding
13. (CAT)412122817122828Coding
14. (TTGA)312129526129537Non coding
15. (GGAT)312148368148379Coding
16. (GCT)412157485157496Coding
17. (TCCTGC)954166051166104Coding
18. (GCG)412173311173322Coding
19. (GCC)515178157178171Coding
20. (GCAT)312189960189971Coding
21. (GCT)1133226018226050Non coding
22. (GAT)412255881255892Coding
23. (CAC)412261580261591Coding
24. (ACC)412264239264250Coding
25. (ATTG)312278024278035Coding
26. (TGGC)312304146304157Coding
27. (TTG)412305136305147Coding
28. (GCTCA)315363475363489Coding
29. (TATT)312370569370580Non coding
30. (TGCT)312386037386048Coding
31. (TCG)412399529399540Coding
32. (TGC)515403471403485Coding
33. (TGC)412417059417070Coding
34. (TAA)412426423426434Non coding
35. (GGT)412427339427350Coding
36. (GGA)412431155431166Coding
37. (GATT)312435309435320Coding
38. (GCA)412442016442027Coding
39. (TGG)412444963444974Coding
40. (GTT)412451885451896Coding
41. (TGGG)312477531477542Coding
42. (CAC)412500119500130Coding
43. (TCAAG)315500164500178Coding
44. (ATGTGG)318508960508977Coding
45. (ACTC)312510956510967Coding
46. (TTCC)312516407516418Coding
47. (CCA)412522620522631Coding
48. (ATCG)312525013525024Coding
49. (ACCA)312525580525591Coding
50. (CTCA)312535414535425Coding-Non coding
51. (CTTCT)315537635537649Coding
52. (TGGC)312567927567938Coding
53. (AGC)515582034582048Coding
54. (TGA)412606636606647Coding
55. (AATC)312608730608741Coding
56. (TCGC)312618063618074Coding
57. (GAGCA)315634805634819Coding
58. (CGAAGA)318681317681334Coding
59. (TTGG)312696149696160Coding
60. (TTCT)312715825715836Non coding
61. (CTG)412719832719843Coding
62. (TCG)412728901728912Non coding
63. (CGTTTC)318755082755099Non coding
64. (TCG)412760137760148Coding
65. (TCTGA)315780717780731Coding
66. (G)1717802413802429Non coding
67. (AAAC)312809578809589Non coding
68. (TGA)412828223828234Coding
69. (GCTG)312834448834459Coding
70. (CAA)412837319837330Coding
71. (TGGT)312841956841967Coding
72. (CGA)412847902847913Coding
73. (GCAA)312854207854218Coding
74. (TGG)412879282879293Coding
75. (AATC)312879882879893Non coding
76. (AAGA)312932366932377Non coding
77. (AAAG)312967076967087Non coding
78. (G)1313967120967132Non coding
79. (AGT)721975507975527Non coding
80. (CATGAC)742983708983749Coding
81. (AACC)31210121731012184Coding
82. (C)141410171811017194Coding
83. (GCT)41210196871019698Coding
84. (TGG)41210293801029391Non coding
85. (GTGA)31210466351046646Coding
86. (GAT)41210840331084044Coding
87. (AATC)31211001681100179Coding-Non coding
88. (ATG)41211191591119170Coding
89. (AAGCTC)31811329131132930Non coding
90. (AAGC)31211377801137791Non coding
91. (CCA)41211484581148469Coding
92. (GCCACC)42411680141168037Coding
93. (CAA)41212057131205724Coding
94. (ACA)41212263701226381Coding
95. (CTG)41212373171237328Coding
96. (CCA)41212405111240522Non coding
97. (GGC)41212487851248796Coding
98. (GCC)41212567931256804Coding
99. (AAAG)31212650091265020Coding
100. (ATCA)31212904381290449Coding-Non coding
101. (GCA)41212961471296158Coding
102. (CTG)41213728901372901Coding
103. (CAA)41214013171401328Coding
104. (CCT)41214049461404957Coding
105. (AAT)41214111821411193Coding
106. (AACA)31214178961417907Coding
107. (CAAT)31214240131424024Coding
108. (CCG)41214402421440253Coding
109. (CAAA)31214656311465642Coding
110. (CAGC)31214803581480369Coding
111. (GCA)41215115481511559Non coding
112. (GCT)41215211931521204Coding
113. (TGC)41215403151540326Coding
114. (C)121215455281545539Coding
115. (GGCCAG)31815734471573464Coding
116. (CCAG)31215849181584929Coding
117. (GACTTG)31815911921591209Coding
118. (CCCAG)31516254241625438Coding
119. (GCT)41216383791638390Coding
120. (ATG)61816603291660346Coding
121. (CATT)31216660261666037Non coding
122. (CCTGAT)31817314991731516Coding
123. (CCAA)31217466581746669Coding
124. (CAA)41217475471747558Coding
125. (ATTG)31217609571760968Coding
126. (ATTC)31217777531777764Coding
127. (GCTCAA)31817920361792053Coding
128. (GAG)41218061071806118Coding
129. (GAGCT)31518350841835098Coding
130. (AAC)41218433671843378Coding
131. (ACTA)31218597461859757Non coding
132. (CAC)41218720431872054Coding
133. (ATCC)31218771141877125Coding
134. (CGG)41218869241886935Coding
135. (CTG)41219138401913851Coding
136. (CTG)41219164411916452Coding
137. (AAAC)31219208201920831Coding
138. (CAA)41219354891935500Non coding
139. (CAA)41219590331959044Coding
140. (CAC)41219657501965761Coding
141. (TGC)51519778771977891Coding
142. (GCG)41219802231980234Coding
143. (TCAA)31219841531984164Coding-Non coding
144. (AGCG)31219934971993508Coding
145. (TGG)51520055182005532Coding
146. (TGC)41220202772020288Coding
147. (CAT)41220379442037955Coding
148. (GCA)41220487452048756Coding
149. (CTG)41220876072087618Coding
150. (TGG)41220903522090363Coding
151. (CTG)41221008952100906Coding
152. (TCAC)31221290872129098Non coding
153. (CAGC)31221473922147403Coding
154. (GCC)41221605372160548Coding
155. (CTG)51521741672174181Coding
156. (CTG)41221742172174228Coding
157. (TGC)41221818112181822Coding
158. (ATAG)31221903962190407Non coding
159. (GGTG)31221937312193742Coding
160. (TCAA)31222546272254638Coding
161. (ATCC)31222626092262620Coding
162. (AGCTTG)42422637502263773Coding
163. (AAC)92722743952274421Coding
164. (CCG)61822766112276628Coding
165. (ACCA)31223150362315047Coding
166. (ACA)41223426082342619Coding
167. (GA)61223547672354778Coding
168. (AACC)31223845552384566Coding
169. (CTG)51524098502409864Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.