CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9313 (NC_005071 2410874 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 169     Density of SSR      : 1SSR/ 14.27 kb   Average length of SSR  : 13.59 bp
Coding      : 140     Non-Coding           : 25   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 1 87 56 7 14 169
IMPERFECT 2 67 880 621 88 55 1713
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)41273797390Coding
2. (GGC)5151753617550Coding
3. (GGC)4121756017571Coding
4. (TGG)4122805528066Coding
5. (TGC)5154241442428Coding
6. (TTG)4124437044381Coding
7. (GTG)4125926959280Coding
8. (CGT)4126465364664Coding
9. (CAT)412122817122828Coding
10. (GCT)412157485157496Coding
11. (GCG)412173311173322Coding
12. (GCC)515178157178171Coding
13. (GCT)1133226018226050Non coding
14. (GAT)412255881255892Coding
15. (CAC)412261580261591Coding
16. (ACC)412264239264250Coding
17. (TTG)412305136305147Coding
18. (TCG)412399529399540Coding
19. (TGC)515403471403485Coding
20. (TGC)412417059417070Coding
21. (TAA)412426423426434Non coding
22. (GGT)412427339427350Coding
23. (GGA)412431155431166Coding
24. (GCA)412442016442027Coding
25. (TGG)412444963444974Coding
26. (GTT)412451885451896Coding
27. (CAC)412500119500130Coding
28. (CCA)412522620522631Coding
29. (AGC)515582034582048Coding
30. (TGA)412606636606647Coding
31. (CTG)412719832719843Coding
32. (TCG)412728901728912Non coding
33. (TCG)412760137760148Coding
34. (TGA)412828223828234Coding
35. (CAA)412837319837330Coding
36. (CGA)412847902847913Coding
37. (TGG)412879282879293Coding
38. (AGT)721975507975527Non coding
39. (GCT)41210196871019698Coding
40. (TGG)41210293801029391Non coding
41. (GAT)41210840331084044Coding
42. (ATG)41211191591119170Coding
43. (CCA)41211484581148469Coding
44. (CAA)41212057131205724Coding
45. (ACA)41212263701226381Coding
46. (CTG)41212373171237328Coding
47. (CCA)41212405111240522Non coding
48. (GGC)41212487851248796Coding
49. (GCC)41212567931256804Coding
50. (GCA)41212961471296158Coding
51. (CTG)41213728901372901Coding
52. (CAA)41214013171401328Coding
53. (CCT)41214049461404957Coding
54. (AAT)41214111821411193Coding
55. (CCG)41214402421440253Coding
56. (GCA)41215115481511559Non coding
57. (GCT)41215211931521204Coding
58. (TGC)41215403151540326Coding
59. (GCT)41216383791638390Coding
60. (ATG)61816603291660346Coding
61. (CAA)41217475471747558Coding
62. (GAG)41218061071806118Coding
63. (AAC)41218433671843378Coding
64. (CAC)41218720431872054Coding
65. (CGG)41218869241886935Coding
66. (CTG)41219138401913851Coding
67. (CTG)41219164411916452Coding
68. (CAA)41219354891935500Non coding
69. (CAA)41219590331959044Coding
70. (CAC)41219657501965761Coding
71. (TGC)51519778771977891Coding
72. (GCG)41219802231980234Coding
73. (TGG)51520055182005532Coding
74. (TGC)41220202772020288Coding
75. (CAT)41220379442037955Coding
76. (GCA)41220487452048756Coding
77. (CTG)41220876072087618Coding
78. (TGG)41220903522090363Coding
79. (CTG)41221008952100906Coding
80. (GCC)41221605372160548Coding
81. (CTG)51521741672174181Coding
82. (CTG)41221742172174228Coding
83. (TGC)41221818112181822Coding
84. (AAC)92722743952274421Coding
85. (CCG)61822766112276628Coding
86. (ACA)41223426082342619Coding
87. (CTG)51524098502409864Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.