CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9313 (NC_005071 2410874 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 169     Density of SSR      : 1SSR/ 14.27 kb   Average length of SSR  : 13.59 bp
Coding      : 140     Non-Coding           : 25   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 1 87 56 7 14 169
IMPERFECT 2 67 880 621 88 55 1713
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGGT)3123628936300Non coding
2. (CAGT)312100748100759Coding
3. (TTGA)312129526129537Non coding
4. (GGAT)312148368148379Coding
5. (GCAT)312189960189971Coding
6. (ATTG)312278024278035Coding
7. (TGGC)312304146304157Coding
8. (TATT)312370569370580Non coding
9. (TGCT)312386037386048Coding
10. (GATT)312435309435320Coding
11. (TGGG)312477531477542Coding
12. (ACTC)312510956510967Coding
13. (TTCC)312516407516418Coding
14. (ATCG)312525013525024Coding
15. (ACCA)312525580525591Coding
16. (CTCA)312535414535425Coding-Non coding
17. (TGGC)312567927567938Coding
18. (AATC)312608730608741Coding
19. (TCGC)312618063618074Coding
20. (TTGG)312696149696160Coding
21. (TTCT)312715825715836Non coding
22. (AAAC)312809578809589Non coding
23. (GCTG)312834448834459Coding
24. (TGGT)312841956841967Coding
25. (GCAA)312854207854218Coding
26. (AATC)312879882879893Non coding
27. (AAGA)312932366932377Non coding
28. (AAAG)312967076967087Non coding
29. (AACC)31210121731012184Coding
30. (GTGA)31210466351046646Coding
31. (AATC)31211001681100179Coding-Non coding
32. (AAGC)31211377801137791Non coding
33. (AAAG)31212650091265020Coding
34. (ATCA)31212904381290449Coding-Non coding
35. (AACA)31214178961417907Coding
36. (CAAT)31214240131424024Coding
37. (CAAA)31214656311465642Coding
38. (CAGC)31214803581480369Coding
39. (CCAG)31215849181584929Coding
40. (CATT)31216660261666037Non coding
41. (CCAA)31217466581746669Coding
42. (ATTG)31217609571760968Coding
43. (ATTC)31217777531777764Coding
44. (ACTA)31218597461859757Non coding
45. (ATCC)31218771141877125Coding
46. (AAAC)31219208201920831Coding
47. (TCAA)31219841531984164Coding-Non coding
48. (AGCG)31219934971993508Coding
49. (TCAC)31221290872129098Non coding
50. (CAGC)31221473922147403Coding
51. (ATAG)31221903962190407Non coding
52. (GGTG)31221937312193742Coding
53. (TCAA)31222546272254638Coding
54. (ATCC)31222626092262620Coding
55. (ACCA)31223150362315047Coding
56. (AACC)31223845552384566Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.