CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9515 (NC_008817 1704177 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 179     Density of SSR      : 1SSR/ 9.52 kb   Average length of SSR  : 13.12 bp
Coding      : 120     Non-Coding           : 50   Coding and Non-Coding : 9
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 12 6 60 89 5 7 179
IMPERFECT 22 93 836 896 148 69 2064
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GATG)3121153611547Coding
2. (GGC)4121625816269Coding
3. (GGC)4121627916290Coding
4. (CGG)4121647016481Coding
5. (TAAT)3122328123292Coding
6. (TATT)3124567345684Non coding
7. (TTAAA)3158881888832Non coding
8. (CAATTG)4249886698889Coding
9. (CCA)412102662102673Coding
10. (ATT)412114445114456Coding
11. (TGC)412124603124614Coding
12. (CAT)412130582130593Coding
13. (AAAT)312138338138349Non coding
14. (ATAA)312140561140572Coding
15. (ATA)515147410147424Non coding
16. (ATT)412175320175331Coding
17. (ATTTTT)318176389176406Coding-Non coding
18. (TAGT)312179700179711Non coding
19. (ATAA)312198802198813Coding
20. (ATAA)312208164208175Coding
21. (TTTG)312213227213238Coding
22. (AGAA)312231295231306Coding
23. (AAAT)312232379232390Coding
24. (ACC)618240512240529Coding
25. (A)1212242180242191Non coding
26. (CTT)412246878246889Coding
27. (AGC)412264682264693Coding
28. (TATTT)315271017271031Non coding
29. (AAAAAT)318279498279515Coding
30. (TAAT)312281271281282Non coding
31. (TCT)412320118320129Coding
32. (TATT)312325838325849Coding-Non coding
33. (AATT)312339534339545Coding-Non coding
34. (ATTT)312364161364172Non coding
35. (ATG)515377318377332Coding
36. (AT)612381339381350Non coding
37. (ATAA)312383643383654Coding
38. (AATT)312392127392138Coding
39. (CAG)412402084402095Coding
40. (AGAC)312416465416476Coding
41. (CAG)618416927416944Coding
42. (AT)612435525435536Non coding
43. (ATT)412438529438540Coding
44. (TTA)412440675440686Non coding
45. (TTTA)312452215452226Non coding
46. (AATC)312457587457598Coding
47. (CCA)515471584471598Coding
48. (CATT)312480640480651Non coding
49. (ATAA)312483612483623Non coding
50. (TCA)412488595488606Coding
51. (CTTT)312495881495892Coding
52. (TAA)412503894503905Coding
53. (TTAA)312505238505249Non coding
54. (TCT)412509046509057Coding
55. (GAT)412513025513036Coding
56. (AAT)412518514518525Coding
57. (AAT)412519139519150Coding
58. (TTAT)312538640538651Coding
59. (TCAA)312541399541410Coding
60. (GCT)515546152546166Coding
61. (TATT)312569471569482Coding
62. (TAAT)312573591573602Non coding
63. (ATTT)312578380578391Coding
64. (CTT)412600223600234Coding
65. (ATTA)312614774614785Coding-Non coding
66. (AATC)312623713623724Coding
67. (T)1616636690636705Non coding
68. (AATA)312641160641171Coding
69. (CAT)721648201648221Coding
70. (ATTAA)525654950654974Non coding
71. (TTTA)416655531655546Non coding
72. (TTAT)416683567683582Coding
73. (T)1515695003695017Non coding
74. (AATT)312703246703257Coding
75. (ATT)412707404707415Coding
76. (TAA)412716828716839Coding
77. (AGAA)312763572763583Coding
78. (AGAA)312775786775797Coding
79. (T)1414787024787037Non coding
80. (AT)612791793791804Non coding
81. (TTGTTT)530793340793369Coding
82. (ATT)412813101813112Coding
83. (TAA)412813712813723Coding
84. (ATTT)312817168817179Coding
85. (TTATA)315818875818889Non coding
86. (TTAT)416819203819218Coding
87. (ATTG)312825766825777Coding
88. (TAA)412839570839581Coding
89. (TAT)515847619847633Coding
90. (AATT)312852502852513Coding-Non coding
91. (TAT)412855873855884Coding
92. (AAAT)312856845856856Coding
93. (AATT)312857907857918Coding
94. (TTTA)312869830869841Non coding
95. (ATC)412871195871206Coding
96. (TAAA)312877298877309Non coding
97. (ATTTT)315892245892259Coding
98. (TATT)312892729892740Coding
99. (AATA)312893666893677Coding
100. (AATA)312906779906790Coding
101. (CAA)412941450941461Coding
102. (TTA)412944634944645Non coding
103. (ATTA)312945040945051Non coding
104. (A)1414945716945729Coding
105. (ATTT)312969252969263Non coding
106. (AAT)412974695974706Non coding
107. (AATA)312975243975254Non coding
108. (TTG)41210133461013357Coding
109. (AAT)41210210871021098Coding
110. (AAAT)52010238011023820Coding-Non coding
111. (AATC)31210422621042273Coding
112. (AAAT)31210437771043788Coding
113. (ATT)41210501701050181Coding
114. (A)131310679351067947Non coding
115. (TAAT)31210833421083353Coding
116. (TA)102010836841083703Non coding
117. (AAT)41210848471084858Coding
118. (ATTA)31210936101093621Non coding
119. (AATA)31211023241102335Coding
120. (A)121211044781104489Non coding
121. (A)121211062031106214Non coding
122. (AT)81611073271107342Non coding
123. (ATTT)31211154151115426Non coding
124. (AAAT)31211212591121270Coding-Non coding
125. (TATT)31211392281139239Non coding
126. (T)131311508881150900Non coding
127. (A)131311730681173080Non coding
128. (AATA)31211835811183592Coding
129. (ATAA)41611946941194709Non coding
130. (AATA)31212135611213572Coding
131. (TA)61212294021229413Coding
132. (TAAA)31212315311231542Coding
133. (AAT)41212348991234910Coding
134. (AATT)31212397021239713Coding
135. (AATT)31213010091301020Coding
136. (A)161613065091306524Non coding
137. (AACC)31213083741308385Coding
138. (ATTT)31213323231332334Coding
139. (TAA)41213523201352331Coding
140. (AAGA)31213569621356973Coding
141. (TTC)41213625321362543Coding
142. (AATT)31213630291363040Coding
143. (TAA)41213654731365484Coding
144. (ATC)41213659911366002Coding
145. (TTTA)31213678841367895Non coding
146. (TTTA)31213704661370477Non coding
147. (GAA)41213748961374907Coding
148. (TATT)31213787621378773Non coding
149. (TATT)31213821061382117Non coding
150. (A)151513948331394847Coding
151. (TCAGAT)31814047141404731Coding
152. (AATT)31214061331406144Non coding
153. (TAA)41214174411417452Coding
154. (ATT)41214188551418866Coding
155. (TTTA)31214325151432526Coding
156. (CCAA)31214326771432688Coding
157. (TCAA)31214419841441995Coding
158. (TCA)41214556881455699Coding
159. (TTAC)31214617831461794Coding-Non coding
160. (TAAA)41614653511465366Coding
161. (CCAA)31215097201509731Coding
162. (AAATAG)31815266691526686Non coding
163. (GAAT)31215311641531175Coding
164. (TTGTTT)53015345721534601Coding
165. (TTA)41215367871536798Coding
166. (GTG)41215391331539144Coding
167. (CTT)51515456741545688Coding
168. (TAAT)31215522691552280Coding
169. (ATT)41215898361589847Coding
170. (AATA)31216108791610890Coding
171. (AATT)31216241691624180Coding-Non coding
172. (AAAG)31216336191633630Coding
173. (AGA)41216410371641048Coding
174. (GGAA)31216462491646260Coding
175. (TTGA)31216500281650039Coding
176. (TTC)41216564321656443Coding
177. (AAT)41216784471678458Coding
178. (TAAA)31217004501700461Non coding
179. (CTG)51517032201703234Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.