CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9515 (NC_008817 1704177 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 179     Density of SSR      : 1SSR/ 9.52 kb   Average length of SSR  : 13.12 bp
Coding      : 120     Non-Coding           : 50   Coding and Non-Coding : 9
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 12 6 60 89 5 7 179
IMPERFECT 22 93 836 896 148 69 2064
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGC)4121625816269Coding
2. (GGC)4121627916290Coding
3. (CGG)4121647016481Coding
4. (CCA)412102662102673Coding
5. (ATT)412114445114456Coding
6. (TGC)412124603124614Coding
7. (CAT)412130582130593Coding
8. (ATA)515147410147424Non coding
9. (ATT)412175320175331Coding
10. (ACC)618240512240529Coding
11. (CTT)412246878246889Coding
12. (AGC)412264682264693Coding
13. (TCT)412320118320129Coding
14. (ATG)515377318377332Coding
15. (CAG)412402084402095Coding
16. (CAG)618416927416944Coding
17. (ATT)412438529438540Coding
18. (TTA)412440675440686Non coding
19. (CCA)515471584471598Coding
20. (TCA)412488595488606Coding
21. (TAA)412503894503905Coding
22. (TCT)412509046509057Coding
23. (GAT)412513025513036Coding
24. (AAT)412518514518525Coding
25. (AAT)412519139519150Coding
26. (GCT)515546152546166Coding
27. (CTT)412600223600234Coding
28. (CAT)721648201648221Coding
29. (ATT)412707404707415Coding
30. (TAA)412716828716839Coding
31. (ATT)412813101813112Coding
32. (TAA)412813712813723Coding
33. (TAA)412839570839581Coding
34. (TAT)515847619847633Coding
35. (TAT)412855873855884Coding
36. (ATC)412871195871206Coding
37. (CAA)412941450941461Coding
38. (TTA)412944634944645Non coding
39. (AAT)412974695974706Non coding
40. (TTG)41210133461013357Coding
41. (AAT)41210210871021098Coding
42. (ATT)41210501701050181Coding
43. (AAT)41210848471084858Coding
44. (AAT)41212348991234910Coding
45. (TAA)41213523201352331Coding
46. (TTC)41213625321362543Coding
47. (TAA)41213654731365484Coding
48. (ATC)41213659911366002Coding
49. (GAA)41213748961374907Coding
50. (TAA)41214174411417452Coding
51. (ATT)41214188551418866Coding
52. (TCA)41214556881455699Coding
53. (TTA)41215367871536798Coding
54. (GTG)41215391331539144Coding
55. (CTT)51515456741545688Coding
56. (ATT)41215898361589847Coding
57. (AGA)41216410371641048Coding
58. (TTC)41216564321656443Coding
59. (AAT)41216784471678458Coding
60. (CTG)51517032201703234Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.