CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. MIT 9515 (NC_008817 1704177 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 179     Density of SSR      : 1SSR/ 9.52 kb   Average length of SSR  : 13.12 bp
Coding      : 120     Non-Coding           : 50   Coding and Non-Coding : 9
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 12 6 60 89 5 7 179
IMPERFECT 22 93 836 896 148 69 2064
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GATG)3121153611547Coding
2. (TAAT)3122328123292Coding
3. (TATT)3124567345684Non coding
4. (AAAT)312138338138349Non coding
5. (ATAA)312140561140572Coding
6. (TAGT)312179700179711Non coding
7. (ATAA)312198802198813Coding
8. (ATAA)312208164208175Coding
9. (TTTG)312213227213238Coding
10. (AGAA)312231295231306Coding
11. (AAAT)312232379232390Coding
12. (TAAT)312281271281282Non coding
13. (TATT)312325838325849Coding-Non coding
14. (AATT)312339534339545Coding-Non coding
15. (ATTT)312364161364172Non coding
16. (ATAA)312383643383654Coding
17. (AATT)312392127392138Coding
18. (AGAC)312416465416476Coding
19. (TTTA)312452215452226Non coding
20. (AATC)312457587457598Coding
21. (CATT)312480640480651Non coding
22. (ATAA)312483612483623Non coding
23. (CTTT)312495881495892Coding
24. (TTAA)312505238505249Non coding
25. (TTAT)312538640538651Coding
26. (TCAA)312541399541410Coding
27. (TATT)312569471569482Coding
28. (TAAT)312573591573602Non coding
29. (ATTT)312578380578391Coding
30. (ATTA)312614774614785Coding-Non coding
31. (AATC)312623713623724Coding
32. (AATA)312641160641171Coding
33. (TTTA)416655531655546Non coding
34. (TTAT)416683567683582Coding
35. (AATT)312703246703257Coding
36. (AGAA)312763572763583Coding
37. (AGAA)312775786775797Coding
38. (ATTT)312817168817179Coding
39. (TTAT)416819203819218Coding
40. (ATTG)312825766825777Coding
41. (AATT)312852502852513Coding-Non coding
42. (AAAT)312856845856856Coding
43. (AATT)312857907857918Coding
44. (TTTA)312869830869841Non coding
45. (TAAA)312877298877309Non coding
46. (TATT)312892729892740Coding
47. (AATA)312893666893677Coding
48. (AATA)312906779906790Coding
49. (ATTA)312945040945051Non coding
50. (ATTT)312969252969263Non coding
51. (AATA)312975243975254Non coding
52. (AAAT)52010238011023820Coding-Non coding
53. (AATC)31210422621042273Coding
54. (AAAT)31210437771043788Coding
55. (TAAT)31210833421083353Coding
56. (ATTA)31210936101093621Non coding
57. (AATA)31211023241102335Coding
58. (ATTT)31211154151115426Non coding
59. (AAAT)31211212591121270Coding-Non coding
60. (TATT)31211392281139239Non coding
61. (AATA)31211835811183592Coding
62. (ATAA)41611946941194709Non coding
63. (AATA)31212135611213572Coding
64. (TAAA)31212315311231542Coding
65. (AATT)31212397021239713Coding
66. (AATT)31213010091301020Coding
67. (AACC)31213083741308385Coding
68. (ATTT)31213323231332334Coding
69. (AAGA)31213569621356973Coding
70. (AATT)31213630291363040Coding
71. (TTTA)31213678841367895Non coding
72. (TTTA)31213704661370477Non coding
73. (TATT)31213787621378773Non coding
74. (TATT)31213821061382117Non coding
75. (AATT)31214061331406144Non coding
76. (TTTA)31214325151432526Coding
77. (CCAA)31214326771432688Coding
78. (TCAA)31214419841441995Coding
79. (TTAC)31214617831461794Coding-Non coding
80. (TAAA)41614653511465366Coding
81. (CCAA)31215097201509731Coding
82. (GAAT)31215311641531175Coding
83. (TAAT)31215522691552280Coding
84. (AATA)31216108791610890Coding
85. (AATT)31216241691624180Coding-Non coding
86. (AAAG)31216336191633630Coding
87. (GGAA)31216462491646260Coding
88. (TTGA)31216500281650039Coding
89. (TAAA)31217004501700461Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.