CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. NATL1A (NC_008819 1864732 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 150     Density of SSR      : 1SSR/ 12.43 kb   Average length of SSR  : 13.31 bp
Coding      : 97     Non-Coding           : 43   Coding and Non-Coding : 10
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 6 51 71 11 7 150
IMPERFECT 10 85 709 822 104 53 1783
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124859Non coding
2. (GAAT)31220572068Coding
3. (AGA)4121698216993Coding
4. (GTG)6186430764324Coding
5. (TTGT)3127029570306Coding
6. (CTTCT)6307699977028Coding
7. (AAAC)3128031780328Non coding
8. (CTG)412123811123822Coding
9. (TTG)412144558144569Coding
10. (TATTT)315168184168198Coding
11. (CTT)412183941183952Non coding
12. (ATT)412186953186964Coding
13. (TTC)412187337187348Coding
14. (ATTT)312210436210447Coding
15. (TAA)412219024219035Coding
16. (TTTA)312232813232824Non coding
17. (AATT)312266166266177Coding
18. (ATTTG)315266827266841Coding
19. (CCA)412285105285116Coding
20. (ATTT)312297591297602Non coding
21. (AGA)515305917305931Coding
22. (GCA)412307829307840Coding
23. (CAAA)312318283318294Coding
24. (AAT)412328608328619Coding
25. (GCA)412330760330771Coding
26. (GAAA)312348136348147Coding
27. (ATT)412366667366678Non coding
28. (AGAT)312367957367968Non coding
29. (CTT)412372939372950Coding
30. (AAAT)312393384393395Coding
31. (AAC)412401275401286Coding
32. (TTTG)312416515416526Non coding
33. (T)1414427759427772Non coding
34. (AAAT)312430730430741Coding
35. (GA)612432196432207Coding
36. (AAAT)312444453444464Non coding
37. (CCA)618471804471821Coding
38. (CATGTC)530495844495873Coding
39. (TTAA)312499814499825Coding
40. (TGGA)312521677521688Coding
41. (TTAT)312531327531338Non coding
42. (AGGC)312563617563628Coding
43. (ATTA)312564287564298Coding-Non coding
44. (ACAA)312590242590253Coding
45. (ATGA)312614285614296Non coding
46. (ATAA)312641129641140Coding
47. (TTAT)312641148641159Coding
48. (TTA)515642783642797Coding
49. (ATTT)312648331648342Coding
50. (AATTT)315650679650693Coding-Non coding
51. (ATTA)312689355689366Non coding
52. (T)1313690261690273Non coding
53. (ATTT)312696382696393Non coding
54. (TTA)515699622699636Non coding
55. (AAT)412715129715140Coding
56. (GATTT)315747051747065Coding
57. (ATGACC)848752330752377Coding
58. (TTGA)312758271758282Non coding
59. (TGATT)315761436761450Coding-Non coding
60. (T)1313771523771535Non coding
61. (GGTT)312772004772015Coding
62. (TTAT)312795754795765Coding
63. (GATTT)315805407805421Coding
64. (TTC)412812360812371Coding
65. (TA)612827220827231Coding
66. (TTCC)312827659827670Coding
67. (GTTG)312857951857962Coding
68. (TAG)412859139859150Coding
69. (ATT)412895390895401Coding
70. (TTAT)312906570906581Non coding
71. (TCCA)312913941913952Coding
72. (AATT)312949284949295Non coding
73. (AACAGA)318961442961459Coding
74. (AAG)412962352962363Coding
75. (A)1313963414963426Non coding
76. (AATT)312988287988298Non coding
77. (AATA)312994400994411Non coding
78. (TATT)312997851997862Non coding
79. (AAAT)31210014981001509Coding-Non coding
80. (AAAGA)31510022021002216Coding
81. (AAT)72110024001002420Coding
82. (TCC)41210042871004298Coding
83. (AAAAT)31510046101004624Non coding
84. (TGT)41210108751010886Coding
85. (GAA)41210153931015404Coding
86. (GAT)51510416431041657Coding
87. (TC)61210485211048532Coding
88. (AAAG)31210770491077060Coding
89. (TTTC)31210774791077490Coding
90. (AAATAA)31810827011082718Coding-Non coding
91. (ATT)51510914731091487Coding
92. (TAAA)31210956451095656Coding
93. (AATT)31210971101097121Coding-Non coding
94. (CCAG)31210984221098433Coding
95. (ATTG)31211048091104820Coding
96. (TAT)41211054981105509Coding
97. (ATTC)31211153681115379Non coding
98. (TTAA)31211278941127905Non coding
99. (ACTGGA)42411295451129568Non coding
100. (GATT)31211381591138170Non coding
101. (ACC)41211393011139312Coding
102. (TGT)41211474121147423Coding
103. (AAAG)31211658461165857Non coding
104. (AT)61211677071167718Non coding
105. (ATC)41211821131182124Coding
106. (ACTA)31211834541183465Coding-Non coding
107. (ACA)41211949291194940Coding
108. (AAAT)31212136171213628Coding
109. (AAT)41212142911214302Non coding
110. (ATAA)31212160801216091Coding
111. (ATTT)31212185381218549Coding-Non coding
112. (TCA)41212385641238575Coding
113. (CAAT)31212553121255323Coding
114. (AGAA)31212649271264938Coding
115. (GGT)41213155641315575Coding
116. (GAAA)31213210811321092Coding
117. (AAT)41213267791326790Non coding
118. (TTCT)31213277751327786Non coding
119. (AAAT)31213338461333857Non coding
120. (TGAT)31213420301342041Non coding
121. (AAC)41213742471374258Coding
122. (TTCT)41613861411386156Coding
123. (TTTACT)31813960951396112Coding
124. (AAAAT)31514150741415088Coding
125. (ATT)41214264881426499Non coding
126. (AT)61214285611428572Coding
127. (TAAA)31214372051437216Coding
128. (TAT)41214460311446042Coding
129. (ATTT)31214680641468075Coding
130. (ATC)41214758891475900Coding
131. (CAAT)31214828721482883Non coding
132. (AATATT)31814845621484579Coding
133. (ACT)51514899481489962Non coding
134. (AAAT)31215053061505317Coding
135. (CAAA)31215155921515603Non coding
136. (TCT)41215262961526307Coding
137. (AGA)41215563071556318Coding
138. (TTTA)31215879071587918Coding-Non coding
139. (AATT)41615886531588668Coding-Non coding
140. (CT)71416039981604011Coding
141. (CTC)41216085041608515Coding
142. (CAAT)31216217411621752Coding
143. (TTGT)41616234821623497Coding
144. (TCTT)31216288681628879Non coding
145. (TTTA)31216839351683946Coding
146. (CAT)41217033631703374Coding
147. (AAAT)31217351231735134Coding
148. (TATTA)31517398281739842Non coding
149. (AAT)41217650161765027Non coding
150. (AGA)41217894851789496Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.