CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. NATL1A (NC_008819 1864732 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 150     Density of SSR      : 1SSR/ 12.43 kb   Average length of SSR  : 13.31 bp
Coding      : 97     Non-Coding           : 43   Coding and Non-Coding : 10
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 6 51 71 11 7 150
IMPERFECT 10 85 709 822 104 53 1783
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124859Non coding
2. (AGA)4121698216993Coding
3. (GTG)6186430764324Coding
4. (CTG)412123811123822Coding
5. (TTG)412144558144569Coding
6. (CTT)412183941183952Non coding
7. (ATT)412186953186964Coding
8. (TTC)412187337187348Coding
9. (TAA)412219024219035Coding
10. (CCA)412285105285116Coding
11. (AGA)515305917305931Coding
12. (GCA)412307829307840Coding
13. (AAT)412328608328619Coding
14. (GCA)412330760330771Coding
15. (ATT)412366667366678Non coding
16. (CTT)412372939372950Coding
17. (AAC)412401275401286Coding
18. (CCA)618471804471821Coding
19. (TTA)515642783642797Coding
20. (TTA)515699622699636Non coding
21. (AAT)412715129715140Coding
22. (TTC)412812360812371Coding
23. (TAG)412859139859150Coding
24. (ATT)412895390895401Coding
25. (AAG)412962352962363Coding
26. (AAT)72110024001002420Coding
27. (TCC)41210042871004298Coding
28. (TGT)41210108751010886Coding
29. (GAA)41210153931015404Coding
30. (GAT)51510416431041657Coding
31. (ATT)51510914731091487Coding
32. (TAT)41211054981105509Coding
33. (ACC)41211393011139312Coding
34. (TGT)41211474121147423Coding
35. (ATC)41211821131182124Coding
36. (ACA)41211949291194940Coding
37. (AAT)41212142911214302Non coding
38. (TCA)41212385641238575Coding
39. (GGT)41213155641315575Coding
40. (AAT)41213267791326790Non coding
41. (AAC)41213742471374258Coding
42. (ATT)41214264881426499Non coding
43. (TAT)41214460311446042Coding
44. (ATC)41214758891475900Coding
45. (ACT)51514899481489962Non coding
46. (TCT)41215262961526307Coding
47. (AGA)41215563071556318Coding
48. (CTC)41216085041608515Coding
49. (CAT)41217033631703374Coding
50. (AAT)41217650161765027Non coding
51. (AGA)41217894851789496Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.