CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. NATL1A (NC_008819 1864732 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 150     Density of SSR      : 1SSR/ 12.43 kb   Average length of SSR  : 13.31 bp
Coding      : 97     Non-Coding           : 43   Coding and Non-Coding : 10
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 6 51 71 11 7 150
IMPERFECT 10 85 709 822 104 53 1783
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GAAT)31220572068Coding
2. (TTGT)3127029570306Coding
3. (AAAC)3128031780328Non coding
4. (ATTT)312210436210447Coding
5. (TTTA)312232813232824Non coding
6. (AATT)312266166266177Coding
7. (ATTT)312297591297602Non coding
8. (CAAA)312318283318294Coding
9. (GAAA)312348136348147Coding
10. (AGAT)312367957367968Non coding
11. (AAAT)312393384393395Coding
12. (TTTG)312416515416526Non coding
13. (AAAT)312430730430741Coding
14. (AAAT)312444453444464Non coding
15. (TTAA)312499814499825Coding
16. (TGGA)312521677521688Coding
17. (TTAT)312531327531338Non coding
18. (AGGC)312563617563628Coding
19. (ATTA)312564287564298Coding-Non coding
20. (ACAA)312590242590253Coding
21. (ATGA)312614285614296Non coding
22. (ATAA)312641129641140Coding
23. (TTAT)312641148641159Coding
24. (ATTT)312648331648342Coding
25. (ATTA)312689355689366Non coding
26. (ATTT)312696382696393Non coding
27. (TTGA)312758271758282Non coding
28. (GGTT)312772004772015Coding
29. (TTAT)312795754795765Coding
30. (TTCC)312827659827670Coding
31. (GTTG)312857951857962Coding
32. (TTAT)312906570906581Non coding
33. (TCCA)312913941913952Coding
34. (AATT)312949284949295Non coding
35. (AATT)312988287988298Non coding
36. (AATA)312994400994411Non coding
37. (TATT)312997851997862Non coding
38. (AAAT)31210014981001509Coding-Non coding
39. (AAAG)31210770491077060Coding
40. (TTTC)31210774791077490Coding
41. (TAAA)31210956451095656Coding
42. (AATT)31210971101097121Coding-Non coding
43. (CCAG)31210984221098433Coding
44. (ATTG)31211048091104820Coding
45. (ATTC)31211153681115379Non coding
46. (TTAA)31211278941127905Non coding
47. (GATT)31211381591138170Non coding
48. (AAAG)31211658461165857Non coding
49. (ACTA)31211834541183465Coding-Non coding
50. (AAAT)31212136171213628Coding
51. (ATAA)31212160801216091Coding
52. (ATTT)31212185381218549Coding-Non coding
53. (CAAT)31212553121255323Coding
54. (AGAA)31212649271264938Coding
55. (GAAA)31213210811321092Coding
56. (TTCT)31213277751327786Non coding
57. (AAAT)31213338461333857Non coding
58. (TGAT)31213420301342041Non coding
59. (TTCT)41613861411386156Coding
60. (TAAA)31214372051437216Coding
61. (ATTT)31214680641468075Coding
62. (CAAT)31214828721482883Non coding
63. (AAAT)31215053061505317Coding
64. (CAAA)31215155921515603Non coding
65. (TTTA)31215879071587918Coding-Non coding
66. (AATT)41615886531588668Coding-Non coding
67. (CAAT)31216217411621752Coding
68. (TTGT)41616234821623497Coding
69. (TCTT)31216288681628879Non coding
70. (TTTA)31216839351683946Coding
71. (AAAT)31217351231735134Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.