CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. NATL2A (NC_007335 1842900 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 145     Density of SSR      : 1SSR/ 12.71 kb   Average length of SSR  : 13.23 bp
Coding      : 105     Non-Coding           : 33   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 54 70 7 5 145
IMPERFECT 10 93 698 786 98 49 1734
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAC)4124859Non coding
2. (TAAG)31289788989Coding
3. (GGC)4121656216573Coding
4. (AGA)4121698516996Coding
5. (AGGC)3123155531566Coding
6. (TTCT)3123887738888Coding
7. (GTG)6185568455701Coding
8. (TTGT)3126167161682Coding
9. (ATCA)3126629566306Coding-Non coding
10. (GAG)4128034280353Coding
11. (TTA)4128865788668Non coding
12. (TGA)4129293592946Coding
13. (CTG)412105988105999Coding
14. (TTG)412126734126745Coding
15. (TTTA)312142359142370Non coding
16. (TATTT)315150359150373Coding
17. (CTT)412166113166124Non coding
18. (ATT)412169147169158Coding
19. (TTC)412169531169542Coding
20. (ATTT)312192633192644Coding
21. (TAA)412201226201237Coding
22. (AATT)312248375248386Coding
23. (ATTTG)315249036249050Coding
24. (CCA)412267312267323Coding
25. (ATTT)312279792279803Non coding
26. (AGA)515288116288130Coding
27. (GCA)412290028290039Coding
28. (GCA)412312954312965Coding
29. (GAAA)312330328330339Coding
30. (TAATT)420340361340380Non coding
31. (AATA)312342054342065Non coding
32. (CAT)412345069345080Coding
33. (ATT)412348866348877Non coding
34. (AGAT)312352998353009Non coding
35. (CTT)412357979357990Coding
36. (AAAT)312378412378423Coding
37. (AAC)412386378386389Coding
38. (TTTG)312404146404157Non coding
39. (CAG)412407525407536Coding
40. (AAAT)312418353418364Coding
41. (GA)612419819419830Coding
42. (AAAT)312432081432092Coding
43. (CCA)618459430459447Coding
44. (TTGG)312467430467441Coding
45. (TGTCCA)636483460483495Coding
46. (TTAA)312487447487458Coding
47. (TGGA)312509310509321Coding
48. (AGGC)312551255551266Coding
49. (ACAA)312577892577903Coding
50. (ATGA)312601944601955Coding
51. (CGA)412605565605576Coding
52. (TAATT)630627718627747Non coding
53. (ATAA)312628791628802Coding
54. (TTAT)312628810628821Coding
55. (TTA)515630445630459Coding
56. (ATTT)312635993636004Coding
57. (AATTT)315638341638355Coding-Non coding
58. (CAT)412674439674450Coding
59. (T)1212677893677904Non coding
60. (AGAT)312682763682774Non coding
61. (TTAT)312684015684026Non coding
62. (CTTT)312685605685616Non coding
63. (AACCAA)424739941739964Coding
64. (ACCATG)742739966740007Coding
65. (TTGA)312745902745913Non coding
66. (GGTT)312759632759643Coding
67. (GTTG)312804320804331Coding
68. (TAG)412805430805441Coding
69. (TATT)312825527825538Coding
70. (ATT)412841684841695Coding
71. (TCCA)312860235860246Coding
72. (AATT)312895585895596Non coding
73. (A)1313909700909712Non coding
74. (A)1313937649937661Non coding
75. (AATA)312940684940695Non coding
76. (ACC)412941416941427Coding
77. (TATT)312944138944149Non coding
78. (AAAGA)315948495948509Coding
79. (AAT)618948696948713Coding
80. (AAAAT)315950904950918Non coding
81. (TGT)412957192957203Coding
82. (GAA)412961725961736Coding
83. (GAT)515989785989799Coding
84. (AAAG)31210251231025134Coding
85. (TTTC)31210255531025564Coding
86. (AAATAA)31810307801030797Coding-Non coding
87. (AATT)31210452011045212Coding-Non coding
88. (CAT)41210453301045341Coding
89. (CCAG)31210465101046521Coding
90. (ATTG)31210528861052897Coding
91. (TAT)41210535691053580Coding
92. (ATTC)31210633321063343Coding-Non coding
93. (TTAA)31210758391075850Non coding
94. (GAA)41210760911076102Non coding
95. (GATT)31210862311086242Non coding
96. (ACC)41210873751087386Coding
97. (TGT)41210954861095497Coding
98. (CAA)51510989111098925Coding
99. (ACA)41211434551143466Coding
100. (ATA)41211560761156087Coding
101. (AAAT)31211621421162153Coding
102. (ATAA)31211646051164616Coding
103. (AAAT)31211654911165502Coding
104. (TCA)41211870861187097Coding
105. (CAAT)31212038471203858Coding
106. (AGAA)31212134121213423Coding
107. (CTG)61812311841231201Coding
108. (CTG)61812316701231687Coding
109. (GAAA)31212452581245269Coding
110. (GGT)41212772121277223Coding
111. (TGAT)31212976941297705Non coding
112. (AAGA)31213283121328323Coding
113. (AATT)31213309251330936Non coding
114. (TTAT)31213424191342430Non coding
115. (TTCT)41613516341351649Coding
116. (TTTACT)31813615881361605Coding
117. (AT)61213940551394066Coding
118. (GAAA)31213958051395816Coding
119. (TTGA)41614020741402089Coding
120. (TAAA)31214027001402711Coding
121. (TAT)41214115261411537Coding
122. (ATTT)31214335611433572Coding
123. (ATC)41214413811441392Coding
124. (AAAT)31214686981468709Coding
125. (AG)71414784031478416Coding
126. (CAAA)31214789811478992Non coding
127. (CAAA)31214877101487721Coding
128. (TCT)41214896861489697Coding
129. (AGA)41215196971519708Coding
130. (AT)61215243861524397Non coding
131. (AATT)41615520381552053Coding-Non coding
132. (CT)71415673861567399Coding
133. (CTC)41215718831571894Coding
134. (CAAT)31215848671584878Coding
135. (AGCA)31215902261590237Non coding
136. (TTTA)31216533601653371Coding
137. (CAT)41216728451672856Coding
138. (ATCA)31217288391728850Non coding
139. (AAGA)31217321321732143Coding
140. (T)121217392961739307Non coding
141. (AGA)41217676341767645Coding
142. (AGAA)31217823891782400Coding
143. (AAG)41218198531819864Coding
144. (TATT)31218246161824627Coding-Non coding
145. (GAA)41218305471830558Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.