CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. NATL2A (NC_007335 1842900 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 145     Density of SSR      : 1SSR/ 12.71 kb   Average length of SSR  : 13.23 bp
Coding      : 105     Non-Coding           : 33   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 54 70 7 5 145
IMPERFECT 10 93 698 786 98 49 1734
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAC)4124859Non coding
2. (GGC)4121656216573Coding
3. (AGA)4121698516996Coding
4. (GTG)6185568455701Coding
5. (GAG)4128034280353Coding
6. (TTA)4128865788668Non coding
7. (TGA)4129293592946Coding
8. (CTG)412105988105999Coding
9. (TTG)412126734126745Coding
10. (CTT)412166113166124Non coding
11. (ATT)412169147169158Coding
12. (TTC)412169531169542Coding
13. (TAA)412201226201237Coding
14. (CCA)412267312267323Coding
15. (AGA)515288116288130Coding
16. (GCA)412290028290039Coding
17. (GCA)412312954312965Coding
18. (CAT)412345069345080Coding
19. (ATT)412348866348877Non coding
20. (CTT)412357979357990Coding
21. (AAC)412386378386389Coding
22. (CAG)412407525407536Coding
23. (CCA)618459430459447Coding
24. (CGA)412605565605576Coding
25. (TTA)515630445630459Coding
26. (CAT)412674439674450Coding
27. (TAG)412805430805441Coding
28. (ATT)412841684841695Coding
29. (ACC)412941416941427Coding
30. (AAT)618948696948713Coding
31. (TGT)412957192957203Coding
32. (GAA)412961725961736Coding
33. (GAT)515989785989799Coding
34. (CAT)41210453301045341Coding
35. (TAT)41210535691053580Coding
36. (GAA)41210760911076102Non coding
37. (ACC)41210873751087386Coding
38. (TGT)41210954861095497Coding
39. (CAA)51510989111098925Coding
40. (ACA)41211434551143466Coding
41. (ATA)41211560761156087Coding
42. (TCA)41211870861187097Coding
43. (CTG)61812311841231201Coding
44. (CTG)61812316701231687Coding
45. (GGT)41212772121277223Coding
46. (TAT)41214115261411537Coding
47. (ATC)41214413811441392Coding
48. (TCT)41214896861489697Coding
49. (AGA)41215196971519708Coding
50. (CTC)41215718831571894Coding
51. (CAT)41216728451672856Coding
52. (AGA)41217676341767645Coding
53. (AAG)41218198531819864Coding
54. (GAA)41218305471830558Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.