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Organism:
Prochlorococcus marinus str. NATL2A
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(NC_007335 , 1842900 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
145
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Density of SSR
:
1SSR/
12.71
kb
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Average length of SSR
:
13.23
bp
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Coding
:
105
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Non-Coding
:
33
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Coding and Non-Coding
:
7
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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4
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5
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54
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70
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7
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5
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145
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (TAAG)3 | 12 | 8978 | 8989 | Coding |
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2.
| (AGGC)3 | 12 | 31555 | 31566 | Coding |
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3.
| (TTCT)3 | 12 | 38877 | 38888 | Coding |
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4.
| (TTGT)3 | 12 | 61671 | 61682 | Coding |
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5.
| (ATCA)3 | 12 | 66295 | 66306 | Coding-Non coding |
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6.
| (TTTA)3 | 12 | 142359 | 142370 | Non coding |
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7.
| (ATTT)3 | 12 | 192633 | 192644 | Coding |
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8.
| (AATT)3 | 12 | 248375 | 248386 | Coding |
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9.
| (ATTT)3 | 12 | 279792 | 279803 | Non coding |
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10.
| (GAAA)3 | 12 | 330328 | 330339 | Coding |
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11.
| (AATA)3 | 12 | 342054 | 342065 | Non coding |
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12.
| (AGAT)3 | 12 | 352998 | 353009 | Non coding |
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13.
| (AAAT)3 | 12 | 378412 | 378423 | Coding |
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14.
| (TTTG)3 | 12 | 404146 | 404157 | Non coding |
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15.
| (AAAT)3 | 12 | 418353 | 418364 | Coding |
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16.
| (AAAT)3 | 12 | 432081 | 432092 | Coding |
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17.
| (TTGG)3 | 12 | 467430 | 467441 | Coding |
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18.
| (TTAA)3 | 12 | 487447 | 487458 | Coding |
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19.
| (TGGA)3 | 12 | 509310 | 509321 | Coding |
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20.
| (AGGC)3 | 12 | 551255 | 551266 | Coding |
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21.
| (ACAA)3 | 12 | 577892 | 577903 | Coding |
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22.
| (ATGA)3 | 12 | 601944 | 601955 | Coding |
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23.
| (ATAA)3 | 12 | 628791 | 628802 | Coding |
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24.
| (TTAT)3 | 12 | 628810 | 628821 | Coding |
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25.
| (ATTT)3 | 12 | 635993 | 636004 | Coding |
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26.
| (AGAT)3 | 12 | 682763 | 682774 | Non coding |
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27.
| (TTAT)3 | 12 | 684015 | 684026 | Non coding |
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28.
| (CTTT)3 | 12 | 685605 | 685616 | Non coding |
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29.
| (TTGA)3 | 12 | 745902 | 745913 | Non coding |
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30.
| (GGTT)3 | 12 | 759632 | 759643 | Coding |
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31.
| (GTTG)3 | 12 | 804320 | 804331 | Coding |
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32.
| (TATT)3 | 12 | 825527 | 825538 | Coding |
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33.
| (TCCA)3 | 12 | 860235 | 860246 | Coding |
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34.
| (AATT)3 | 12 | 895585 | 895596 | Non coding |
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35.
| (AATA)3 | 12 | 940684 | 940695 | Non coding |
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36.
| (TATT)3 | 12 | 944138 | 944149 | Non coding |
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37.
| (AAAG)3 | 12 | 1025123 | 1025134 | Coding |
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38.
| (TTTC)3 | 12 | 1025553 | 1025564 | Coding |
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39.
| (AATT)3 | 12 | 1045201 | 1045212 | Coding-Non coding |
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40.
| (CCAG)3 | 12 | 1046510 | 1046521 | Coding |
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41.
| (ATTG)3 | 12 | 1052886 | 1052897 | Coding |
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42.
| (ATTC)3 | 12 | 1063332 | 1063343 | Coding-Non coding |
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43.
| (TTAA)3 | 12 | 1075839 | 1075850 | Non coding |
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44.
| (GATT)3 | 12 | 1086231 | 1086242 | Non coding |
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45.
| (AAAT)3 | 12 | 1162142 | 1162153 | Coding |
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46.
| (ATAA)3 | 12 | 1164605 | 1164616 | Coding |
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47.
| (AAAT)3 | 12 | 1165491 | 1165502 | Coding |
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48.
| (CAAT)3 | 12 | 1203847 | 1203858 | Coding |
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49.
| (AGAA)3 | 12 | 1213412 | 1213423 | Coding |
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50.
| (GAAA)3 | 12 | 1245258 | 1245269 | Coding |
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51.
| (TGAT)3 | 12 | 1297694 | 1297705 | Non coding |
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52.
| (AAGA)3 | 12 | 1328312 | 1328323 | Coding |
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53.
| (AATT)3 | 12 | 1330925 | 1330936 | Non coding |
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54.
| (TTAT)3 | 12 | 1342419 | 1342430 | Non coding |
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55.
| (TTCT)4 | 16 | 1351634 | 1351649 | Coding |
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56.
| (GAAA)3 | 12 | 1395805 | 1395816 | Coding |
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57.
| (TTGA)4 | 16 | 1402074 | 1402089 | Coding |
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58.
| (TAAA)3 | 12 | 1402700 | 1402711 | Coding |
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59.
| (ATTT)3 | 12 | 1433561 | 1433572 | Coding |
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60.
| (AAAT)3 | 12 | 1468698 | 1468709 | Coding |
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61.
| (CAAA)3 | 12 | 1478981 | 1478992 | Non coding |
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62.
| (CAAA)3 | 12 | 1487710 | 1487721 | Coding |
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63.
| (AATT)4 | 16 | 1552038 | 1552053 | Coding-Non coding |
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64.
| (CAAT)3 | 12 | 1584867 | 1584878 | Coding |
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65.
| (AGCA)3 | 12 | 1590226 | 1590237 | Non coding |
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66.
| (TTTA)3 | 12 | 1653360 | 1653371 | Coding |
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67.
| (ATCA)3 | 12 | 1728839 | 1728850 | Non coding |
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68.
| (AAGA)3 | 12 | 1732132 | 1732143 | Coding |
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69.
| (AGAA)3 | 12 | 1782389 | 1782400 | Coding |
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70.
| (TATT)3 | 12 | 1824616 | 1824627 | Coding-Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
Best viewed at 1280 x 768.
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