CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus str. NATL2A (NC_007335 1842900 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 145     Density of SSR      : 1SSR/ 12.71 kb   Average length of SSR  : 13.23 bp
Coding      : 105     Non-Coding           : 33   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 4 5 54 70 7 5 145
IMPERFECT 10 93 698 786 98 49 1734
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAAG)31289788989Coding
2. (AGGC)3123155531566Coding
3. (TTCT)3123887738888Coding
4. (TTGT)3126167161682Coding
5. (ATCA)3126629566306Coding-Non coding
6. (TTTA)312142359142370Non coding
7. (ATTT)312192633192644Coding
8. (AATT)312248375248386Coding
9. (ATTT)312279792279803Non coding
10. (GAAA)312330328330339Coding
11. (AATA)312342054342065Non coding
12. (AGAT)312352998353009Non coding
13. (AAAT)312378412378423Coding
14. (TTTG)312404146404157Non coding
15. (AAAT)312418353418364Coding
16. (AAAT)312432081432092Coding
17. (TTGG)312467430467441Coding
18. (TTAA)312487447487458Coding
19. (TGGA)312509310509321Coding
20. (AGGC)312551255551266Coding
21. (ACAA)312577892577903Coding
22. (ATGA)312601944601955Coding
23. (ATAA)312628791628802Coding
24. (TTAT)312628810628821Coding
25. (ATTT)312635993636004Coding
26. (AGAT)312682763682774Non coding
27. (TTAT)312684015684026Non coding
28. (CTTT)312685605685616Non coding
29. (TTGA)312745902745913Non coding
30. (GGTT)312759632759643Coding
31. (GTTG)312804320804331Coding
32. (TATT)312825527825538Coding
33. (TCCA)312860235860246Coding
34. (AATT)312895585895596Non coding
35. (AATA)312940684940695Non coding
36. (TATT)312944138944149Non coding
37. (AAAG)31210251231025134Coding
38. (TTTC)31210255531025564Coding
39. (AATT)31210452011045212Coding-Non coding
40. (CCAG)31210465101046521Coding
41. (ATTG)31210528861052897Coding
42. (ATTC)31210633321063343Coding-Non coding
43. (TTAA)31210758391075850Non coding
44. (GATT)31210862311086242Non coding
45. (AAAT)31211621421162153Coding
46. (ATAA)31211646051164616Coding
47. (AAAT)31211654911165502Coding
48. (CAAT)31212038471203858Coding
49. (AGAA)31212134121213423Coding
50. (GAAA)31212452581245269Coding
51. (TGAT)31212976941297705Non coding
52. (AAGA)31213283121328323Coding
53. (AATT)31213309251330936Non coding
54. (TTAT)31213424191342430Non coding
55. (TTCT)41613516341351649Coding
56. (GAAA)31213958051395816Coding
57. (TTGA)41614020741402089Coding
58. (TAAA)31214027001402711Coding
59. (ATTT)31214335611433572Coding
60. (AAAT)31214686981468709Coding
61. (CAAA)31214789811478992Non coding
62. (CAAA)31214877101487721Coding
63. (AATT)41615520381552053Coding-Non coding
64. (CAAT)31215848671584878Coding
65. (AGCA)31215902261590237Non coding
66. (TTTA)31216533601653371Coding
67. (ATCA)31217288391728850Non coding
68. (AAGA)31217321321732143Coding
69. (AGAA)31217823891782400Coding
70. (TATT)31218246161824627Coding-Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.