CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus subsp. marinus str. CCMP1375 (NC_005042 1751081 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 115     Density of SSR      : 1SSR/ 15.23 kb   Average length of SSR  : 13.85 bp
Coding      : 93     Non-Coding           : 17   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 49 58 4 4 115
IMPERFECT 1 67 705 598 80 48 1499
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGC)5151651916533Coding
2. (GGC)5151659416608Coding
3. (AGTA)3121859018601Coding
4. (TGGT)3122998129992Coding
5. (GGC)6185254952566Coding
6. (TAA)4127004670057Coding
7. (AGA)4128150081511Coding
8. (GAA)4128328183292Coding
9. (TTTCT)3159667396687Coding
10. (AAAG)3129955899569Coding
11. (GCT)412149671149682Coding
12. (TAAT)312152395152406Coding
13. (ATTG)312181827181838Coding
14. (AGCC)312182902182913Coding
15. (AGT)412189376189387Coding
16. (ATTT)312195543195554Coding
17. (CTG)412278657278668Coding
18. (TTAA)312338382338393Coding-Non coding
19. (CTTT)312370445370456Non coding
20. (TTGT)312372659372670Non coding
21. (GTTT)312380751380762Coding
22. (TCA)515418374418388Coding
23. (GCT)515427443427457Coding
24. (CAC)618430687430704Coding
25. (GCAT)312434161434172Coding
26. (TTGG)312450249450260Coding
27. (GTTT)312458928458939Coding
28. (GTT)412474486474497Coding
29. (ATTT)312475961475972Coding
30. (TGGA)312495205495216Coding
31. (TAAT)312510677510688Non coding
32. (AATT)312511707511718Coding-Non coding
33. (CTTT)312515700515711Coding
34. (GATT)312519054519065Coding
35. (GCA)515523065523079Coding
36. (AATT)312556374556385Non coding
37. (ATTT)312559720559731Coding-Non coding
38. (CTT)515564566564580Coding
39. (ATC)412579289579300Coding
40. (TCTT)312580844580855Coding
41. (CAT)618582260582277Coding
42. (CAT)618582479582496Coding
43. (ATC)412590223590234Coding
44. (GAA)412601005601016Coding
45. (AAAT)312603092603103Coding
46. (AATA)312626864626875Coding
47. (CAT)412634285634296Coding
48. (AAAG)312677687677698Coding
49. (ATGAGC)424731514731537Coding
50. (AGTT)312736567736578Non coding
51. (GTT)412770017770028Coding
52. (AACATG)636777383777418Coding
53. (CCAT)312797360797371Coding
54. (TCCT)312812947812958Coding
55. (AGC)618825717825734Coding
56. (ATT)412846883846894Coding
57. (CTTT)312863062863073Coding
58. (GAA)412870737870748Coding
59. (GAAA)312874582874593Coding
60. (GAAG)312913345913356Coding
61. (TAAT)312920701920712Non coding
62. (GGA)412948949948960Coding
63. (TAA)515955419955433Coding-Non coding
64. (AAT)41210058371005848Coding
65. (AATG)31210149361014947Coding
66. (AACA)31210155261015537Coding
67. (TTAA)31210641991064210Non coding
68. (TCC)41210940871094098Coding
69. (GAT)41210986661098677Non coding
70. (ATA)41210997701099781Non coding
71. (TTAT)31211051631105174Non coding
72. (AATC)31211054921105503Coding
73. (ATAA)31211058181105829Non coding
74. (TTAT)31211075641107575Non coding
75. (AAGA)31211697261169737Coding
76. (TATT)31211783271178338Non coding
77. (AACC)31211957191195730Coding
78. (GAA)41212036421203653Coding
79. (ATT)41212192021219213Non coding
80. (GAT)41212272131227224Coding
81. (TGA)41212293101229321Coding
82. (AAGA)31212547131254724Coding
83. (TTAT)31212575631257574Non coding
84. (CCT)41212599111259922Coding
85. (AGCC)31212695751269586Coding
86. (GGA)41213207561320767Coding
87. (CCATAA)1710213847701384871Coding
88. (CATGAG)63613848731384908Coding
89. (ATC)41214015921401603Coding
90. (ATTG)31214058681405879Non coding
91. (ATC)41214259401425951Coding
92. (GCT)41214476431447654Coding
93. (TTA)41214544511454462Coding
94. (TCAAT)31514691361469150Coding
95. (TCTT)31214855941485605Coding
96. (ATC)41214909801490991Coding
97. (AGA)41215060861506097Coding
98. (GAA)41215061981506209Coding
99. (ACAA)31215073541507365Coding
100. (AAT)41215202561520267Coding
101. (TCGT)31215358551535866Coding
102. (TAAA)31215652671565278Non coding
103. (ATTA)31215668011566812Coding-Non coding
104. (AAGA)31215993521599363Coding
105. (TTGC)31215995391599550Coding
106. (ATCA)31216173871617398Coding
107. (AAAT)31216314161631427Coding
108. (GCA)41216396171639628Coding
109. (CAG)41216605131660524Coding
110. (CAAGC)31516626001662614Coding
111. (AAAAG)31516953211695335Coding
112. (TCAA)31217242581724269Coding
113. (AAT)41217363171736328Coding
114. (AGA)41217395371739548Coding
115. (AATC)31217469061746917Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.