CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus subsp. marinus str. CCMP1375 (NC_005042 1751081 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 115     Density of SSR      : 1SSR/ 15.23 kb   Average length of SSR  : 13.85 bp
Coding      : 93     Non-Coding           : 17   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 49 58 4 4 115
IMPERFECT 1 67 705 598 80 48 1499
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGC)5151651916533Coding
2. (GGC)5151659416608Coding
3. (GGC)6185254952566Coding
4. (TAA)4127004670057Coding
5. (AGA)4128150081511Coding
6. (GAA)4128328183292Coding
7. (GCT)412149671149682Coding
8. (AGT)412189376189387Coding
9. (CTG)412278657278668Coding
10. (TCA)515418374418388Coding
11. (GCT)515427443427457Coding
12. (CAC)618430687430704Coding
13. (GTT)412474486474497Coding
14. (GCA)515523065523079Coding
15. (CTT)515564566564580Coding
16. (ATC)412579289579300Coding
17. (CAT)618582260582277Coding
18. (CAT)618582479582496Coding
19. (ATC)412590223590234Coding
20. (GAA)412601005601016Coding
21. (CAT)412634285634296Coding
22. (GTT)412770017770028Coding
23. (AGC)618825717825734Coding
24. (ATT)412846883846894Coding
25. (GAA)412870737870748Coding
26. (GGA)412948949948960Coding
27. (TAA)515955419955433Coding-Non coding
28. (AAT)41210058371005848Coding
29. (TCC)41210940871094098Coding
30. (GAT)41210986661098677Non coding
31. (ATA)41210997701099781Non coding
32. (GAA)41212036421203653Coding
33. (ATT)41212192021219213Non coding
34. (GAT)41212272131227224Coding
35. (TGA)41212293101229321Coding
36. (CCT)41212599111259922Coding
37. (GGA)41213207561320767Coding
38. (ATC)41214015921401603Coding
39. (ATC)41214259401425951Coding
40. (GCT)41214476431447654Coding
41. (TTA)41214544511454462Coding
42. (ATC)41214909801490991Coding
43. (AGA)41215060861506097Coding
44. (GAA)41215061981506209Coding
45. (AAT)41215202561520267Coding
46. (GCA)41216396171639628Coding
47. (CAG)41216605131660524Coding
48. (AAT)41217363171736328Coding
49. (AGA)41217395371739548Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.