CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus subsp. marinus str. CCMP1375 (NC_005042 1751081 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 115     Density of SSR      : 1SSR/ 15.23 kb   Average length of SSR  : 13.85 bp
Coding      : 93     Non-Coding           : 17   Coding and Non-Coding : 5
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 49 58 4 4 115
IMPERFECT 1 67 705 598 80 48 1499
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AGTA)3121859018601Coding
2. (TGGT)3122998129992Coding
3. (AAAG)3129955899569Coding
4. (TAAT)312152395152406Coding
5. (ATTG)312181827181838Coding
6. (AGCC)312182902182913Coding
7. (ATTT)312195543195554Coding
8. (TTAA)312338382338393Coding-Non coding
9. (CTTT)312370445370456Non coding
10. (TTGT)312372659372670Non coding
11. (GTTT)312380751380762Coding
12. (GCAT)312434161434172Coding
13. (TTGG)312450249450260Coding
14. (GTTT)312458928458939Coding
15. (ATTT)312475961475972Coding
16. (TGGA)312495205495216Coding
17. (TAAT)312510677510688Non coding
18. (AATT)312511707511718Coding-Non coding
19. (CTTT)312515700515711Coding
20. (GATT)312519054519065Coding
21. (AATT)312556374556385Non coding
22. (ATTT)312559720559731Coding-Non coding
23. (TCTT)312580844580855Coding
24. (AAAT)312603092603103Coding
25. (AATA)312626864626875Coding
26. (AAAG)312677687677698Coding
27. (AGTT)312736567736578Non coding
28. (CCAT)312797360797371Coding
29. (TCCT)312812947812958Coding
30. (CTTT)312863062863073Coding
31. (GAAA)312874582874593Coding
32. (GAAG)312913345913356Coding
33. (TAAT)312920701920712Non coding
34. (AATG)31210149361014947Coding
35. (AACA)31210155261015537Coding
36. (TTAA)31210641991064210Non coding
37. (TTAT)31211051631105174Non coding
38. (AATC)31211054921105503Coding
39. (ATAA)31211058181105829Non coding
40. (TTAT)31211075641107575Non coding
41. (AAGA)31211697261169737Coding
42. (TATT)31211783271178338Non coding
43. (AACC)31211957191195730Coding
44. (AAGA)31212547131254724Coding
45. (TTAT)31212575631257574Non coding
46. (AGCC)31212695751269586Coding
47. (ATTG)31214058681405879Non coding
48. (TCTT)31214855941485605Coding
49. (ACAA)31215073541507365Coding
50. (TCGT)31215358551535866Coding
51. (TAAA)31215652671565278Non coding
52. (ATTA)31215668011566812Coding-Non coding
53. (AAGA)31215993521599363Coding
54. (TTGC)31215995391599550Coding
55. (ATCA)31216173871617398Coding
56. (AAAT)31216314161631427Coding
57. (TCAA)31217242581724269Coding
58. (AATC)31217469061746917Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.