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Organism:
Prochlorococcus marinus subsp. pastoris str. CCMP1986
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(NC_005072 , 1657991 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
|
Overlapping Compound
:
0
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Perfect
:
173
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Density of SSR
:
1SSR/
9.58
kb
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Average length of SSR
:
12.78
bp
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Coding
:
107
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Non-Coding
:
51
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Coding and Non-Coding
:
15
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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2
|
0
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64
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93
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6
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8
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173
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (ACT)4 | 12 | 44 | 55 | Non coding |
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2.
| (GTT)4 | 12 | 6345 | 6356 | Coding |
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3.
| (CAAA)3 | 12 | 35421 | 35432 | Coding |
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4.
| (AAAT)3 | 12 | 40012 | 40023 | Coding-Non coding |
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5.
| (TAA)4 | 12 | 58002 | 58013 | Coding |
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6.
| (ATTT)3 | 12 | 58174 | 58185 | Coding-Non coding |
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7.
| (AGA)4 | 12 | 63851 | 63862 | Coding |
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8.
| (ATAA)3 | 12 | 65701 | 65712 | Non coding |
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9.
| (TTTC)3 | 12 | 73163 | 73174 | Coding |
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10.
| (TAAA)3 | 12 | 80949 | 80960 | Coding-Non coding |
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11.
| (CAATTG)4 | 24 | 89254 | 89277 | Coding |
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12.
| (ATT)4 | 12 | 89922 | 89933 | Coding |
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13.
| (TGC)4 | 12 | 114997 | 115008 | Coding |
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14.
| (TAT)4 | 12 | 157924 | 157935 | Coding |
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15.
| (ATTTTT)3 | 18 | 158988 | 159005 | Coding-Non coding |
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16.
| (GCAA)3 | 12 | 159914 | 159925 | Coding |
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17.
| (TAGT)3 | 12 | 162297 | 162308 | Non coding |
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18.
| (GAA)4 | 12 | 189255 | 189266 | Coding |
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19.
| (CAAT)3 | 12 | 215818 | 215829 | Coding |
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20.
| (TTCT)3 | 12 | 220357 | 220368 | Coding |
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21.
| (ACC)4 | 12 | 221200 | 221211 | Coding |
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22.
| (TTTC)3 | 12 | 241310 | 241321 | Coding |
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23.
| (TAAT)3 | 12 | 261925 | 261936 | Non coding |
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24.
| (ATTT)3 | 12 | 270768 | 270779 | Coding |
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25.
| (AAAT)3 | 12 | 276124 | 276135 | Coding |
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26.
| (ATT)4 | 12 | 293392 | 293403 | Non coding |
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27.
| (ATTT)3 | 12 | 295873 | 295884 | Non coding |
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28.
| (TCT)4 | 12 | 300751 | 300762 | Coding |
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29.
| (TTA)5 | 15 | 303250 | 303264 | Non coding |
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30.
| (AATT)3 | 12 | 320171 | 320182 | Coding-Non coding |
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31.
| (TGT)6 | 18 | 324175 | 324192 | Non coding |
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32.
| (TTG)4 | 12 | 329236 | 329247 | Non coding |
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33.
| (ATTTT)3 | 15 | 329429 | 329443 | Non coding |
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34.
| (ATTT)3 | 12 | 351845 | 351856 | Non coding |
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35.
| (CAG)4 | 12 | 370125 | 370136 | Coding |
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36.
| (TAAA)3 | 12 | 378530 | 378541 | Coding |
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37.
| (CAG)6 | 18 | 386308 | 386325 | Coding |
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38.
| (TGAA)3 | 12 | 390891 | 390902 | Coding-Non coding |
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39.
| (AATT)3 | 12 | 397704 | 397715 | Coding |
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40.
| (TGTTAA)3 | 18 | 409147 | 409164 | Coding |
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41.
| (CAG)4 | 12 | 413790 | 413801 | Coding |
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42.
| (AAAAT)3 | 15 | 419719 | 419733 | Coding |
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43.
| (AAGATC)3 | 18 | 430172 | 430189 | Coding |
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44.
| (AAAG)3 | 12 | 440722 | 440733 | Coding |
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45.
| (TTTC)3 | 12 | 461929 | 461940 | Coding |
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46.
| (TAA)5 | 15 | 473501 | 473515 | Coding |
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47.
| (TCT)4 | 12 | 478602 | 478613 | Coding |
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48.
| (AAT)4 | 12 | 488675 | 488686 | Coding |
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49.
| (TCAA)3 | 12 | 510877 | 510888 | Coding |
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50.
| (TATT)3 | 12 | 538404 | 538415 | Coding |
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51.
| (TCTT)3 | 12 | 541681 | 541692 | Coding |
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52.
| (TAAT)3 | 12 | 542498 | 542509 | Non coding |
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53.
| (ATT)5 | 15 | 542526 | 542540 | Non coding |
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54.
| (ATTT)3 | 12 | 547302 | 547313 | Coding |
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55.
| (CAA)4 | 12 | 585220 | 585231 | Non coding |
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56.
| (TTAA)3 | 12 | 596519 | 596530 | Non coding |
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57.
| (TCA)4 | 12 | 607336 | 607347 | Coding |
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58.
| (AATA)3 | 12 | 610098 | 610109 | Coding |
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59.
| (TGG)4 | 12 | 618065 | 618076 | Coding |
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60.
| (AATA)3 | 12 | 624966 | 624977 | Coding |
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61.
| (ATA)4 | 12 | 680513 | 680524 | Coding |
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62.
| (AAT)4 | 12 | 689711 | 689722 | Non coding |
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63.
| (ATT)4 | 12 | 689766 | 689777 | Non coding |
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64.
| (TTTA)3 | 12 | 697820 | 697831 | Non coding |
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65.
| (ATT)4 | 12 | 698450 | 698461 | Non coding |
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66.
| (TATT)3 | 12 | 700548 | 700559 | Non coding |
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67.
| (AAT)4 | 12 | 704824 | 704835 | Coding |
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68.
| (TTAT)3 | 12 | 764742 | 764753 | Non coding |
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69.
| (TTTA)3 | 12 | 768657 | 768668 | Non coding |
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70.
| (TTAT)3 | 12 | 772592 | 772603 | Non coding |
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71.
| (ATA)4 | 12 | 777531 | 777542 | Coding |
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72.
| (ATTT)3 | 12 | 797375 | 797386 | Coding |
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73.
| (TTATA)3 | 15 | 798563 | 798577 | Non coding |
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74.
| (TTAT)4 | 16 | 798891 | 798906 | Coding |
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75.
| (ATAA)3 | 12 | 816576 | 816587 | Coding-Non coding |
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76.
| (TTA)4 | 12 | 822764 | 822775 | Coding |
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77.
| (TAA)4 | 12 | 823199 | 823210 | Coding |
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78.
| (TAT)4 | 12 | 839563 | 839574 | Coding |
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79.
| (AAAT)3 | 12 | 840535 | 840546 | Coding |
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80.
| (ATC)4 | 12 | 859181 | 859192 | Coding |
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81.
| (TAAA)3 | 12 | 861024 | 861035 | Non coding |
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82.
| (AATA)3 | 12 | 877413 | 877424 | Coding |
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83.
| (AATA)3 | 12 | 890527 | 890538 | Coding |
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84.
| (ATTT)3 | 12 | 898988 | 898999 | Coding-Non coding |
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85.
| (TAT)4 | 12 | 909544 | 909555 | Coding |
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86.
| (AAAT)3 | 12 | 925601 | 925612 | Coding |
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87.
| (CAA)4 | 12 | 931436 | 931447 | Coding |
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88.
| (AATT)3 | 12 | 931972 | 931983 | Non coding |
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89.
| (TAAA)3 | 12 | 933404 | 933415 | Non coding |
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90.
| (TTAT)4 | 16 | 942307 | 942322 | Non coding |
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91.
| (ATT)4 | 12 | 947430 | 947441 | Coding |
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92.
| (ATTA)3 | 12 | 961557 | 961568 | Non coding |
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93.
| (TAAA)3 | 12 | 969138 | 969149 | Non coding |
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94.
| (CTAGAG)3 | 18 | 974026 | 974043 | Coding |
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95.
| (TTA)4 | 12 | 979632 | 979643 | Non coding |
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96.
| (ATTC)3 | 12 | 995087 | 995098 | Coding |
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97.
| (AAT)4 | 12 | 1019732 | 1019743 | Coding |
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98.
| (AAT)4 | 12 | 1021443 | 1021454 | Coding |
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99.
| (AAAT)3 | 12 | 1040263 | 1040274 | Coding |
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100.
| (TATT)3 | 12 | 1041447 | 1041458 | Coding |
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101.
| (TATT)3 | 12 | 1051668 | 1051679 | Coding |
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102.
| (AACA)3 | 12 | 1070726 | 1070737 | Non coding |
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103.
| (CTTT)3 | 12 | 1078693 | 1078704 | Coding |
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104.
| (AAAT)3 | 12 | 1106190 | 1106201 | Coding |
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105.
| (ATAA)3 | 12 | 1114364 | 1114375 | Coding |
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106.
| (GAA)4 | 12 | 1115068 | 1115079 | Coding |
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107.
| (ATAA)3 | 12 | 1116071 | 1116082 | Non coding |
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108.
| (ATTT)3 | 12 | 1118617 | 1118628 | Coding |
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109.
| (ATTT)3 | 12 | 1122651 | 1122662 | Coding |
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110.
| (TAAT)3 | 12 | 1122704 | 1122715 | Non coding |
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111.
| (AATA)3 | 12 | 1125217 | 1125228 | Coding |
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112.
| (ATTA)3 | 12 | 1158224 | 1158235 | Non coding |
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113.
| (GAT)4 | 12 | 1169834 | 1169845 | Coding |
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114.
| (GAAT)3 | 12 | 1180348 | 1180359 | Coding |
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115.
| (AAAT)3 | 12 | 1182909 | 1182920 | Coding |
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116.
| (TTAT)3 | 12 | 1184691 | 1184702 | Coding |
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117.
| (AAAT)3 | 12 | 1185203 | 1185214 | Coding-Non coding |
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118.
| (GCA)4 | 12 | 1204106 | 1204117 | Coding |
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119.
| (TTA)4 | 12 | 1221726 | 1221737 | Coding |
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120.
| (AAAT)3 | 12 | 1228059 | 1228070 | Coding |
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121.
| (TTTTA)3 | 15 | 1258139 | 1258153 | Non coding |
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122.
| (AAT)4 | 12 | 1281424 | 1281435 | Non coding |
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123.
| (AAAT)3 | 12 | 1290733 | 1290744 | Coding |
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124.
| (AAGA)3 | 12 | 1310710 | 1310721 | Coding |
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125.
| (AGAA)3 | 12 | 1311747 | 1311758 | Coding |
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126.
| (ATTT)3 | 12 | 1314929 | 1314940 | Coding |
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127.
| (TTC)4 | 12 | 1316296 | 1316307 | Coding |
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128.
| (TAA)4 | 12 | 1319248 | 1319259 | Coding |
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129.
| (ATC)4 | 12 | 1319769 | 1319780 | Non coding |
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130.
| (ATTA)3 | 12 | 1320817 | 1320828 | Non coding |
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131.
| (TTTA)3 | 12 | 1321579 | 1321590 | Non coding |
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132.
| (TCAAAA)3 | 18 | 1321828 | 1321845 | Non coding |
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133.
| (AGT)4 | 12 | 1329695 | 1329706 | Coding |
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134.
| (TTGA)3 | 12 | 1338471 | 1338482 | Non coding |
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135.
| (CAAA)3 | 12 | 1351868 | 1351879 | Coding |
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136.
| (TAAT)3 | 12 | 1354335 | 1354346 | Non coding |
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137.
| (ATC)4 | 12 | 1366820 | 1366831 | Coding |
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138.
| (TTTA)3 | 12 | 1395195 | 1395206 | Coding |
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139.
| (ACAG)3 | 12 | 1407792 | 1407803 | Coding |
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140.
| (AAT)4 | 12 | 1408220 | 1408231 | Coding |
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141.
| (TCA)4 | 12 | 1418255 | 1418266 | Coding |
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142.
| (TTAC)3 | 12 | 1424349 | 1424360 | Coding-Non coding |
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143.
| (TAAA)3 | 12 | 1433837 | 1433848 | Coding-Non coding |
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144.
| (TTTTA)3 | 15 | 1435086 | 1435100 | Coding |
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145.
| (AAAT)3 | 12 | 1450887 | 1450898 | Non coding |
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146.
| (AATT)3 | 12 | 1471476 | 1471487 | Coding-Non coding |
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147.
| (G)16 | 16 | 1476025 | 1476040 | Non coding |
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148.
| (TAAT)3 | 12 | 1476478 | 1476489 | Coding-Non coding |
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149.
| (CCTACT)3 | 18 | 1479774 | 1479791 | Coding |
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150.
| (CAA)4 | 12 | 1479808 | 1479819 | Coding |
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151.
| (AAATAG)5 | 30 | 1485122 | 1485151 | Non coding |
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152.
| (TTG)4 | 12 | 1490912 | 1490923 | Coding |
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153.
| (AAAT)3 | 12 | 1493374 | 1493385 | Non coding |
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154.
| (CAA)4 | 12 | 1495712 | 1495723 | Coding |
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155.
| (CTT)6 | 18 | 1501415 | 1501432 | Coding |
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156.
| (ATT)4 | 12 | 1506865 | 1506876 | Coding |
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157.
| (TGC)4 | 12 | 1525358 | 1525369 | Coding |
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158.
| (AGC)4 | 12 | 1554547 | 1554558 | Coding |
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159.
| (T)13 | 13 | 1556329 | 1556341 | Non coding |
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160.
| (AAAT)3 | 12 | 1559896 | 1559907 | Coding |
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161.
| (TAAT)3 | 12 | 1565556 | 1565567 | Coding-Non coding |
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162.
| (TATT)3 | 12 | 1570649 | 1570660 | Non coding |
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163.
| (AGAA)3 | 12 | 1571941 | 1571952 | Coding |
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164.
| (ATAA)3 | 12 | 1578010 | 1578021 | Coding-Non coding |
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165.
| (ATTTG)4 | 20 | 1583941 | 1583960 | Coding |
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166.
| (AGA)4 | 12 | 1594847 | 1594858 | Coding |
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167.
| (ATA)6 | 18 | 1599261 | 1599278 | Non coding |
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168.
| (GGAA)3 | 12 | 1600054 | 1600065 | Coding |
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169.
| (AAAT)3 | 12 | 1626573 | 1626584 | Coding |
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170.
| (GAA)4 | 12 | 1646631 | 1646642 | Coding |
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171.
| (TAT)4 | 12 | 1647017 | 1647028 | Coding |
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172.
| (CAA)4 | 12 | 1650762 | 1650773 | Coding |
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173.
| (TAAA)3 | 12 | 1654264 | 1654275 | Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
Best viewed at 1280 x 768.
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