CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986 (NC_005072 1657991 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 9.58 kb   Average length of SSR  : 12.78 bp
Coding      : 107     Non-Coding           : 51   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 0 64 93 6 8 173
IMPERFECT 17 92 743 909 140 88 1989
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124455Non coding
2. (GTT)41263456356Coding
3. (CAAA)3123542135432Coding
4. (AAAT)3124001240023Coding-Non coding
5. (TAA)4125800258013Coding
6. (ATTT)3125817458185Coding-Non coding
7. (AGA)4126385163862Coding
8. (ATAA)3126570165712Non coding
9. (TTTC)3127316373174Coding
10. (TAAA)3128094980960Coding-Non coding
11. (CAATTG)4248925489277Coding
12. (ATT)4128992289933Coding
13. (TGC)412114997115008Coding
14. (TAT)412157924157935Coding
15. (ATTTTT)318158988159005Coding-Non coding
16. (GCAA)312159914159925Coding
17. (TAGT)312162297162308Non coding
18. (GAA)412189255189266Coding
19. (CAAT)312215818215829Coding
20. (TTCT)312220357220368Coding
21. (ACC)412221200221211Coding
22. (TTTC)312241310241321Coding
23. (TAAT)312261925261936Non coding
24. (ATTT)312270768270779Coding
25. (AAAT)312276124276135Coding
26. (ATT)412293392293403Non coding
27. (ATTT)312295873295884Non coding
28. (TCT)412300751300762Coding
29. (TTA)515303250303264Non coding
30. (AATT)312320171320182Coding-Non coding
31. (TGT)618324175324192Non coding
32. (TTG)412329236329247Non coding
33. (ATTTT)315329429329443Non coding
34. (ATTT)312351845351856Non coding
35. (CAG)412370125370136Coding
36. (TAAA)312378530378541Coding
37. (CAG)618386308386325Coding
38. (TGAA)312390891390902Coding-Non coding
39. (AATT)312397704397715Coding
40. (TGTTAA)318409147409164Coding
41. (CAG)412413790413801Coding
42. (AAAAT)315419719419733Coding
43. (AAGATC)318430172430189Coding
44. (AAAG)312440722440733Coding
45. (TTTC)312461929461940Coding
46. (TAA)515473501473515Coding
47. (TCT)412478602478613Coding
48. (AAT)412488675488686Coding
49. (TCAA)312510877510888Coding
50. (TATT)312538404538415Coding
51. (TCTT)312541681541692Coding
52. (TAAT)312542498542509Non coding
53. (ATT)515542526542540Non coding
54. (ATTT)312547302547313Coding
55. (CAA)412585220585231Non coding
56. (TTAA)312596519596530Non coding
57. (TCA)412607336607347Coding
58. (AATA)312610098610109Coding
59. (TGG)412618065618076Coding
60. (AATA)312624966624977Coding
61. (ATA)412680513680524Coding
62. (AAT)412689711689722Non coding
63. (ATT)412689766689777Non coding
64. (TTTA)312697820697831Non coding
65. (ATT)412698450698461Non coding
66. (TATT)312700548700559Non coding
67. (AAT)412704824704835Coding
68. (TTAT)312764742764753Non coding
69. (TTTA)312768657768668Non coding
70. (TTAT)312772592772603Non coding
71. (ATA)412777531777542Coding
72. (ATTT)312797375797386Coding
73. (TTATA)315798563798577Non coding
74. (TTAT)416798891798906Coding
75. (ATAA)312816576816587Coding-Non coding
76. (TTA)412822764822775Coding
77. (TAA)412823199823210Coding
78. (TAT)412839563839574Coding
79. (AAAT)312840535840546Coding
80. (ATC)412859181859192Coding
81. (TAAA)312861024861035Non coding
82. (AATA)312877413877424Coding
83. (AATA)312890527890538Coding
84. (ATTT)312898988898999Coding-Non coding
85. (TAT)412909544909555Coding
86. (AAAT)312925601925612Coding
87. (CAA)412931436931447Coding
88. (AATT)312931972931983Non coding
89. (TAAA)312933404933415Non coding
90. (TTAT)416942307942322Non coding
91. (ATT)412947430947441Coding
92. (ATTA)312961557961568Non coding
93. (TAAA)312969138969149Non coding
94. (CTAGAG)318974026974043Coding
95. (TTA)412979632979643Non coding
96. (ATTC)312995087995098Coding
97. (AAT)41210197321019743Coding
98. (AAT)41210214431021454Coding
99. (AAAT)31210402631040274Coding
100. (TATT)31210414471041458Coding
101. (TATT)31210516681051679Coding
102. (AACA)31210707261070737Non coding
103. (CTTT)31210786931078704Coding
104. (AAAT)31211061901106201Coding
105. (ATAA)31211143641114375Coding
106. (GAA)41211150681115079Coding
107. (ATAA)31211160711116082Non coding
108. (ATTT)31211186171118628Coding
109. (ATTT)31211226511122662Coding
110. (TAAT)31211227041122715Non coding
111. (AATA)31211252171125228Coding
112. (ATTA)31211582241158235Non coding
113. (GAT)41211698341169845Coding
114. (GAAT)31211803481180359Coding
115. (AAAT)31211829091182920Coding
116. (TTAT)31211846911184702Coding
117. (AAAT)31211852031185214Coding-Non coding
118. (GCA)41212041061204117Coding
119. (TTA)41212217261221737Coding
120. (AAAT)31212280591228070Coding
121. (TTTTA)31512581391258153Non coding
122. (AAT)41212814241281435Non coding
123. (AAAT)31212907331290744Coding
124. (AAGA)31213107101310721Coding
125. (AGAA)31213117471311758Coding
126. (ATTT)31213149291314940Coding
127. (TTC)41213162961316307Coding
128. (TAA)41213192481319259Coding
129. (ATC)41213197691319780Non coding
130. (ATTA)31213208171320828Non coding
131. (TTTA)31213215791321590Non coding
132. (TCAAAA)31813218281321845Non coding
133. (AGT)41213296951329706Coding
134. (TTGA)31213384711338482Non coding
135. (CAAA)31213518681351879Coding
136. (TAAT)31213543351354346Non coding
137. (ATC)41213668201366831Coding
138. (TTTA)31213951951395206Coding
139. (ACAG)31214077921407803Coding
140. (AAT)41214082201408231Coding
141. (TCA)41214182551418266Coding
142. (TTAC)31214243491424360Coding-Non coding
143. (TAAA)31214338371433848Coding-Non coding
144. (TTTTA)31514350861435100Coding
145. (AAAT)31214508871450898Non coding
146. (AATT)31214714761471487Coding-Non coding
147. (G)161614760251476040Non coding
148. (TAAT)31214764781476489Coding-Non coding
149. (CCTACT)31814797741479791Coding
150. (CAA)41214798081479819Coding
151. (AAATAG)53014851221485151Non coding
152. (TTG)41214909121490923Coding
153. (AAAT)31214933741493385Non coding
154. (CAA)41214957121495723Coding
155. (CTT)61815014151501432Coding
156. (ATT)41215068651506876Coding
157. (TGC)41215253581525369Coding
158. (AGC)41215545471554558Coding
159. (T)131315563291556341Non coding
160. (AAAT)31215598961559907Coding
161. (TAAT)31215655561565567Coding-Non coding
162. (TATT)31215706491570660Non coding
163. (AGAA)31215719411571952Coding
164. (ATAA)31215780101578021Coding-Non coding
165. (ATTTG)42015839411583960Coding
166. (AGA)41215948471594858Coding
167. (ATA)61815992611599278Non coding
168. (GGAA)31216000541600065Coding
169. (AAAT)31216265731626584Coding
170. (GAA)41216466311646642Coding
171. (TAT)41216470171647028Coding
172. (CAA)41216507621650773Coding
173. (TAAA)31216542641654275Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.