CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986 (NC_005072 1657991 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 9.58 kb   Average length of SSR  : 12.78 bp
Coding      : 107     Non-Coding           : 51   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 0 64 93 6 8 173
IMPERFECT 17 92 743 909 140 88 1989
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ACT)4124455Non coding
2. (GTT)41263456356Coding
3. (TAA)4125800258013Coding
4. (AGA)4126385163862Coding
5. (ATT)4128992289933Coding
6. (TGC)412114997115008Coding
7. (TAT)412157924157935Coding
8. (GAA)412189255189266Coding
9. (ACC)412221200221211Coding
10. (ATT)412293392293403Non coding
11. (TCT)412300751300762Coding
12. (TTA)515303250303264Non coding
13. (TGT)618324175324192Non coding
14. (TTG)412329236329247Non coding
15. (CAG)412370125370136Coding
16. (CAG)618386308386325Coding
17. (CAG)412413790413801Coding
18. (TAA)515473501473515Coding
19. (TCT)412478602478613Coding
20. (AAT)412488675488686Coding
21. (ATT)515542526542540Non coding
22. (CAA)412585220585231Non coding
23. (TCA)412607336607347Coding
24. (TGG)412618065618076Coding
25. (ATA)412680513680524Coding
26. (AAT)412689711689722Non coding
27. (ATT)412689766689777Non coding
28. (ATT)412698450698461Non coding
29. (AAT)412704824704835Coding
30. (ATA)412777531777542Coding
31. (TTA)412822764822775Coding
32. (TAA)412823199823210Coding
33. (TAT)412839563839574Coding
34. (ATC)412859181859192Coding
35. (TAT)412909544909555Coding
36. (CAA)412931436931447Coding
37. (ATT)412947430947441Coding
38. (TTA)412979632979643Non coding
39. (AAT)41210197321019743Coding
40. (AAT)41210214431021454Coding
41. (GAA)41211150681115079Coding
42. (GAT)41211698341169845Coding
43. (GCA)41212041061204117Coding
44. (TTA)41212217261221737Coding
45. (AAT)41212814241281435Non coding
46. (TTC)41213162961316307Coding
47. (TAA)41213192481319259Coding
48. (ATC)41213197691319780Non coding
49. (AGT)41213296951329706Coding
50. (ATC)41213668201366831Coding
51. (AAT)41214082201408231Coding
52. (TCA)41214182551418266Coding
53. (CAA)41214798081479819Coding
54. (TTG)41214909121490923Coding
55. (CAA)41214957121495723Coding
56. (CTT)61815014151501432Coding
57. (ATT)41215068651506876Coding
58. (TGC)41215253581525369Coding
59. (AGC)41215545471554558Coding
60. (AGA)41215948471594858Coding
61. (ATA)61815992611599278Non coding
62. (GAA)41216466311646642Coding
63. (TAT)41216470171647028Coding
64. (CAA)41216507621650773Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.