CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Prochlorococcus marinus subsp. pastoris str. CCMP1986 (NC_005072 1657991 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 173     Density of SSR      : 1SSR/ 9.58 kb   Average length of SSR  : 12.78 bp
Coding      : 107     Non-Coding           : 51   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 0 64 93 6 8 173
IMPERFECT 17 92 743 909 140 88 1989
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAAA)3123542135432Coding
2. (AAAT)3124001240023Coding-Non coding
3. (ATTT)3125817458185Coding-Non coding
4. (ATAA)3126570165712Non coding
5. (TTTC)3127316373174Coding
6. (TAAA)3128094980960Coding-Non coding
7. (GCAA)312159914159925Coding
8. (TAGT)312162297162308Non coding
9. (CAAT)312215818215829Coding
10. (TTCT)312220357220368Coding
11. (TTTC)312241310241321Coding
12. (TAAT)312261925261936Non coding
13. (ATTT)312270768270779Coding
14. (AAAT)312276124276135Coding
15. (ATTT)312295873295884Non coding
16. (AATT)312320171320182Coding-Non coding
17. (ATTT)312351845351856Non coding
18. (TAAA)312378530378541Coding
19. (TGAA)312390891390902Coding-Non coding
20. (AATT)312397704397715Coding
21. (AAAG)312440722440733Coding
22. (TTTC)312461929461940Coding
23. (TCAA)312510877510888Coding
24. (TATT)312538404538415Coding
25. (TCTT)312541681541692Coding
26. (TAAT)312542498542509Non coding
27. (ATTT)312547302547313Coding
28. (TTAA)312596519596530Non coding
29. (AATA)312610098610109Coding
30. (AATA)312624966624977Coding
31. (TTTA)312697820697831Non coding
32. (TATT)312700548700559Non coding
33. (TTAT)312764742764753Non coding
34. (TTTA)312768657768668Non coding
35. (TTAT)312772592772603Non coding
36. (ATTT)312797375797386Coding
37. (TTAT)416798891798906Coding
38. (ATAA)312816576816587Coding-Non coding
39. (AAAT)312840535840546Coding
40. (TAAA)312861024861035Non coding
41. (AATA)312877413877424Coding
42. (AATA)312890527890538Coding
43. (ATTT)312898988898999Coding-Non coding
44. (AAAT)312925601925612Coding
45. (AATT)312931972931983Non coding
46. (TAAA)312933404933415Non coding
47. (TTAT)416942307942322Non coding
48. (ATTA)312961557961568Non coding
49. (TAAA)312969138969149Non coding
50. (ATTC)312995087995098Coding
51. (AAAT)31210402631040274Coding
52. (TATT)31210414471041458Coding
53. (TATT)31210516681051679Coding
54. (AACA)31210707261070737Non coding
55. (CTTT)31210786931078704Coding
56. (AAAT)31211061901106201Coding
57. (ATAA)31211143641114375Coding
58. (ATAA)31211160711116082Non coding
59. (ATTT)31211186171118628Coding
60. (ATTT)31211226511122662Coding
61. (TAAT)31211227041122715Non coding
62. (AATA)31211252171125228Coding
63. (ATTA)31211582241158235Non coding
64. (GAAT)31211803481180359Coding
65. (AAAT)31211829091182920Coding
66. (TTAT)31211846911184702Coding
67. (AAAT)31211852031185214Coding-Non coding
68. (AAAT)31212280591228070Coding
69. (AAAT)31212907331290744Coding
70. (AAGA)31213107101310721Coding
71. (AGAA)31213117471311758Coding
72. (ATTT)31213149291314940Coding
73. (ATTA)31213208171320828Non coding
74. (TTTA)31213215791321590Non coding
75. (TTGA)31213384711338482Non coding
76. (CAAA)31213518681351879Coding
77. (TAAT)31213543351354346Non coding
78. (TTTA)31213951951395206Coding
79. (ACAG)31214077921407803Coding
80. (TTAC)31214243491424360Coding-Non coding
81. (TAAA)31214338371433848Coding-Non coding
82. (AAAT)31214508871450898Non coding
83. (AATT)31214714761471487Coding-Non coding
84. (TAAT)31214764781476489Coding-Non coding
85. (AAAT)31214933741493385Non coding
86. (AAAT)31215598961559907Coding
87. (TAAT)31215655561565567Coding-Non coding
88. (TATT)31215706491570660Non coding
89. (AGAA)31215719411571952Coding
90. (ATAA)31215780101578021Coding-Non coding
91. (GGAA)31216000541600065Coding
92. (AAAT)31216265731626584Coding
93. (TAAA)31216542641654275Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.