CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Pseudanabaena sp. PCC 7367 (NC_019701 4557047 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 2   Overlapping Compound : 0
Perfect      : 367     Density of SSR      : 1SSR/ 12.35 kb   Average length of SSR  : 13.48 bp
Coding      : 236     Non-Coding           : 118   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 121 187 24 34 367
IMPERFECT 1 82 1478 1542 195 169 3467
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATACAT)3189510895125Non coding
2. (GCCAGA)318108135108152Coding
3. (GTTGCT)318139602139619Coding
4. (GTTGGC)424254026254049Coding
5. (ATTTGT)318373956373973Coding
6. (TACTTT)318486261486278Coding
7. (TCATCT)318587235587252Coding
8. (CATCGC)530605340605369Coding
9. (AAATAT)424678218678241Non coding
10. (AGTTTT)318827933827950Coding-Non coding
11. (AGATGT)318970050970067Coding
12. (AAGTTG)318987658987675Coding
13. (AGTCTA)31810200831020100Non coding
14. (TAAAAC)31810432031043220Non coding
15. (ATTGAT)42410582991058322Non coding
16. (ATAAAT)31811067401106757Non coding
17. (GATAAA)31812219811221998Non coding
18. (TTGCAT)31821977082197725Coding
19. (AATTTC)31823818152381832Non coding
20. (TATCCA)42423942112394234Coding-Non coding
21. (TGATTC)31824022802402297Coding
22. (GATACT)31827626502762667Coding
23. (ATATAG)63629164042916439Non coding
24. (ATATAA)31829243132924330Non coding
25. (AGAACA)53030543353054364Coding
26. (TGTTCT)31831301653130182Non coding
27. (TATCAA)42433430793343102Coding
28. (AATTTA)31836077573607774Coding
29. (AAACAA)31836767213676738Coding
30. (CAATAC)31838505523850569Coding
31. (ATCCTT)31840634424063459Non coding
32. (TATTTT)31840828764082893Coding-Non coding
33. (TGATCC)31841139014113918Coding
34. (GTGATG)31841247424124759Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.