CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Pseudanabaena sp. PCC 7367 (NC_019701 4557047 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 2   Overlapping Compound : 0
Perfect      : 367     Density of SSR      : 1SSR/ 12.35 kb   Average length of SSR  : 13.48 bp
Coding      : 236     Non-Coding           : 118   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 121 187 24 34 367
IMPERFECT 1 82 1478 1542 195 169 3467
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCTG)31242164227Coding
2. (TAAT)3122211622127Non coding
3. (GCA)4123996939980Coding
4. (AATC)3124323643247Non coding
5. (GCT)4124624246253Coding
6. (TTAAG)4205658356602Non coding
7. (CAC)4127399374004Coding
8. (ATACAT)3189510895125Non coding
9. (GCTA)312106718106729Coding-Non coding
10. (GCCAGA)318108135108152Coding
11. (ACC)412124874124885Coding
12. (GTTGCT)318139602139619Coding
13. (CCA)412148189148200Coding
14. (ATT)412153263153274Coding
15. (GCC)412169950169961Coding
16. (CCA)412185228185239Coding
17. (CAA)412208898208909Coding
18. (TTTA)312217144217155Non coding
19. (GATC)312223288223299Coding
20. (CAC)412226386226397Coding
21. (AGAA)312232844232855Coding
22. (AATTA)315243037243051Non coding
23. (GTTGGC)424254026254049Coding
24. (CAGT)416280878280893Non coding
25. (CGC)412284284284295Coding
26. (ACC)412291432291443Coding
27. (GCCT)312291901291912Coding
28. (TCGC)312319602319613Coding
29. (CAC)412333417333428Coding
30. (TTA)412351151351162Non coding
31. (CAAC)312351297351308Coding
32. (ATT)412354601354612Non coding
33. (CAAT)312363927363938Non coding
34. (AATT)312367924367935Coding
35. (ACTA)416369884369899Non coding
36. (ATTTGT)318373956373973Coding
37. (CCAAT)315375759375773Non coding
38. (AGCA)312379781379792Coding
39. (ATTA)312403966403977Non coding
40. (CAAC)312415335415346Coding
41. (GCT)412438823438834Coding
42. (AACT)312466536466547Non coding
43. (TACTTT)318486261486278Coding
44. (AATT)312501755501766Non coding
45. (CTAT)312510332510343Non coding
46. (AGT)412515806515817Non coding
47. (TGA)412522188522199Coding
48. (TCA)412535799535810Coding
49. (CGAT)312544959544970Coding
50. (GTCA)312558212558223Non coding
51. (CAG)412559224559235Coding
52. (AATTA)315561467561481Coding-Non coding
53. (TAAT)520569378569397Non coding
54. (GTAG)312575467575478Non coding
55. (TCATCT)318587235587252Coding
56. (CATCGC)530605340605369Coding
57. (TGGC)312616647616658Coding
58. (GCCA)312626898626909Coding
59. (CCA)412636759636770Coding
60. (GCAA)312641687641698Coding
61. (TAAAT)315656870656884Non coding
62. (CAC)412664684664695Coding
63. (AAATAT)424678218678241Non coding
64. (AAG)412681842681853Coding
65. (TCAG)312683144683155Coding
66. (ATCG)312700276700287Coding
67. (TGGG)312710507710518Coding
68. (AACT)312717340717351Non coding
69. (AACT)312717354717365Non coding
70. (ATC)412742517742528Coding
71. (CTGG)312767020767031Coding
72. (TCT)412794228794239Coding
73. (TCT)412795905795916Coding
74. (TCT)412816455816466Coding
75. (AGTTTT)318827933827950Coding-Non coding
76. (GGC)412828921828932Coding
77. (CAT)412836074836085Coding
78. (CGAT)312841497841508Coding
79. (TATT)312880920880931Coding
80. (TTTA)312891591891602Non coding
81. (CTGG)312902844902855Coding
82. (ATCG)312914424914435Coding
83. (TTAT)312924382924393Non coding
84. (ATTA)312930670930681Non coding
85. (ATCG)312950636950647Coding
86. (AGATGT)318970050970067Coding
87. (CCA)412976768976779Coding
88. (AAGTTG)318987658987675Coding
89. (ATTG)312990511990522Non coding
90. (AATT)31210194611019472Non coding
91. (AGTCTA)31810200831020100Non coding
92. (TAAAAC)31810432031043220Non coding
93. (TAGC)31210511631051174Non coding
94. (TCGA)31210542551054266Coding
95. (ATTGAT)42410582991058322Non coding
96. (GTTG)31210622481062259Coding
97. (AATA)31210844211084432Non coding
98. (ATAAAT)31811067401106757Non coding
99. (GGT)41211073941107405Coding
100. (ATCG)31211088501108861Coding
101. (ATTA)31211130971113108Non coding
102. (TTAA)31211150201115031Non coding
103. (CGC)41211357211135732Coding
104. (GCCA)31211380861138097Coding
105. (TGG)41211627761162787Coding
106. (TTAA)31211738971173908Coding-Non coding
107. (GCT)51511758481175862Coding
108. (ATCA)31211789901179001Non coding
109. (GCA)41211877241187735Coding
110. (TCGA)31212075321207543Coding
111. (TAAG)31212084561208467Non coding
112. (CTAG)31212112001211211Coding-Non coding
113. (GATAAA)31812219811221998Non coding
114. (TTGA)31212268201226831Coding
115. (ATCG)31212337881233799Coding
116. (CCAG)31212361711236182Coding
117. (GCA)41212824141282425Coding
118. (GGC)41212830961283107Coding
119. (CGATG)42012895501289569Non coding
120. (ATTA)31212924791292490Non coding
121. (GCA)41213105901310601Coding
122. (TCAA)31213432041343215Coding
123. (ATAA)31213450241345035Coding
124. (ACTAA)31513572351357249Non coding
125. (CCAA)31213646181364629Coding
126. (AACCA)31513713711371385Coding
127. (GTG)41213864791386490Coding
128. (GTTGG)31513985701398584Coding
129. (CCG)41214017301401741Coding
130. (ATTGA)31514169921417006Non coding
131. (CGG)41214197881419799Coding
132. (CGAT)31214389701438981Coding
133. (AAG)41214465271446538Coding
134. (CGAT)31214548111454822Coding
135. (GCG)41214571201457131Coding
136. (TGGC)31214634581463469Coding
137. (TTAA)31214676531467664Non coding
138. (AATTA)31514744571474471Non coding
139. (CAG)41214787961478807Coding
140. (ATTG)31215029231502934Non coding
141. (AGCC)31215333551533366Coding
142. (GATT)72815761101576137Non coding
143. (TGGC)31215955151595526Coding
144. (ATAG)31216305701630581Non coding
145. (CGAT)31216365171636528Coding
146. (AGC)41216472551647266Coding
147. (TTGA)31216773031677314Non coding
148. (CAG)41216878141687825Non coding
149. (TTGG)31217039601703971Non coding
150. (ACC)41217064531706464Coding
151. (ACTA)31217302321730243Non coding
152. (CTAC)31217600591760070Coding
153. (AAAG)31217907721790783Non coding
154. (GGCT)31217912961791307Coding
155. (GTTTT)31518000481800062Non coding
156. (CCA)41218269411826952Coding
157. (CCAT)31218270561827067Coding
158. (TGCAA)31518312951831309Coding
159. (TACC)41618446291844644Non coding
160. (ATAA)52018449111844930Non coding
161. (CGG)41218511801851191Coding
162. (CTTC)31218558831855894Coding
163. (CTA)41218600131860024Non coding
164. (CTAC)31218606081860619Coding
165. (TGG)41218670561867067Coding
166. (TGA)41219172981917309Coding
167. (ATCG)31219485601948571Coding
168. (ATT)41219741971974208Coding
169. (CGAT)31219748461974857Coding
170. (ATAG)31219778421977853Non coding
171. (ATG)51519921421992156Coding
172. (GATC)31219974301997441Coding
173. (CGAT)31220014772001488Coding
174. (TAG)41220096822009693Coding
175. (GATT)31220100182010029Non coding
176. (ACTA)52020159142015933Non coding
177. (CGAT)31220447472044758Coding
178. (CCA)41220736112073622Coding
179. (AGGT)31221109322110943Coding
180. (ATCG)31221377242137735Coding
181. (TGAT)31221532542153265Coding
182. (TTGCAT)31821977082197725Coding
183. (CGAT)41622006782200693Coding
184. (GTTA)31222212512221262Coding-Non coding
185. (TCT)41222252702225281Coding
186. (AAG)51522516252251639Coding
187. (AGTA)31222644852264496Non coding
188. (ATCT)31222833372283348Coding
189. (TGG)41222874712287482Coding
190. (TGG)41223011222301133Coding
191. (ATTGG)31523073132307327Non coding
192. (CGT)41223096192309630Coding
193. (TCGA)31223138012313812Non coding
194. (AAT)41223187292318740Coding
195. (AATTTC)31823818152381832Non coding
196. (TATCCA)42423942112394234Coding-Non coding
197. (CCG)41223998902399901Coding
198. (TGATTC)31824022802402297Coding
199. (ATTA)31224136402413651Non coding
200. (AATT)31224754852475496Non coding
201. (AGGT)31224883172488328Coding
202. (GGTG)31225502682550279Coding
203. (CTAG)31225543482554359Non coding
204. (GAT)41225569632556974Coding
205. (TTTA)31225610092561020Coding-Non coding
206. (TAGT)31225694422569453Non coding
207. (TCA)41225841402584151Coding
208. (TTAAG)31526108042610818Coding-Non coding
209. (ACTTT)42026335282633547Non coding
210. (CCAG)31226357682635779Coding
211. (TGG)41226465552646566Coding
212. (ATCG)31226515492651560Non coding
213. (TGC)41226598762659887Non coding
214. (CGAT)31226694632669474Coding
215. (TTGA)31226742072674218Non coding
216. (CGAT)31226771872677198Coding
217. (TGC)41226820822682093Coding
218. (TACA)31226868332686844Non coding
219. (TAA)41227448052744816Coding
220. (ACC)51527454472745461Coding
221. (AGA)41227468012746812Non coding
222. (CCG)41227581472758158Coding
223. (GATACT)31827626502762667Coding
224. (AATAA)31527831142783128Non coding
225. (CT)61227874462787457Coding
226. (TATC)31228049792804990Non coding
227. (TAAT)31228096632809674Non coding
228. (ATTT)31228201422820153Non coding
229. (GTTG)31228312142831225Coding
230. (CAAT)31228396262839637Coding
231. (AATT)31228495992849610Coding
232. (CTAA)31228612472861258Non coding
233. (CTG)41228653942865405Coding
234. (AATT)31228802502880261Coding
235. (AAAT)31229020262902037Non coding
236. (TTAA)31229055352905546Non coding
237. (ATATAG)63629164042916439Non coding
238. (ATATAA)31829243132924330Non coding
239. (ACCCA)31529306992930713Coding
240. (GCA)41229405612940572Coding
241. (GGC)41229486682948679Coding
242. (GATC)31229587942958805Coding
243. (TATG)31229679532967964Coding
244. (ATCG)31229909622990973Coding
245. (GCC)41230099333009944Coding
246. (TGG)41230113413011352Coding
247. (CGAT)31230164123016423Coding
248. (TGG)41230171213017132Coding
249. (TTAA)31230276573027668Non coding
250. (CTG)41230336743033685Coding
251. (CCA)51530371943037208Coding
252. (AGAACA)53030543353054364Coding
253. (AACT)31230594973059508Coding
254. (TGAT)31230625973062608Coding
255. (ATT)41230720133072024Coding
256. (TGTTCT)31831301653130182Non coding
257. (TTAA)31231316153131626Non coding
258. (ATAG)31231332813133292Non coding
259. (GGT)41231392383139249Coding
260. (GATA)31231499433149954Non coding
261. (CCA)41231509383150949Coding
262. (TTAAA)52531616393161663Coding-Non coding
263. (CAG)41231705353170546Coding
264. (GATC)31231822623182273Coding
265. (TTTA)31231859603185971Non coding
266. (ATCG)31231933063193317Coding
267. (CCAGC)31532107133210727Coding
268. (GATT)31232326983232709Non coding
269. (TAGT)31232617123261723Non coding
270. (TCAA)41632696573269672Non coding
271. (GAT)41232824023282413Coding
272. (AATC)31232931773293188Non coding
273. (CCA)41233021793302190Coding
274. (GGT)41233188453318856Coding
275. (TATCAA)42433430793343102Coding
276. (AAT)41233517603351771Non coding
277. (GCA)41233557473355758Coding
278. (TGCT)31233597953359806Coding
279. (AATCC)42033668093366828Non coding
280. (AAT)41233722473372258Coding
281. (ATTTA)31533809883381002Non coding
282. (CTGGT)31534377893437803Coding
283. (GGC)41234417363441747Coding
284. (TGG)41234704733470484Coding
285. (ATTT)31234740983474109Coding
286. (CGAT)31234962993496310Coding
287. (GATC)31235198853519896Coding
288. (GTG)41235577173557728Coding
289. (TCA)41235589233558934Coding
290. (TTAA)31235610433561054Non coding
291. (AATA)31235613833561394Non coding
292. (AATT)31235788063578817Non coding
293. (CCG)41235961163596127Coding
294. (AATTTA)31836077573607774Coding
295. (TATC)31236117653611776Non coding
296. (AAGA)31236257243625735Coding
297. (ATTA)31236328913632902Non coding
298. (TGC)41236421743642185Coding
299. (TAAC)52036456153645634Coding-Non coding
300. (TAAG)31236488013648812Non coding
301. (AAACAA)31836767213676738Coding
302. (AAAC)31236962673696278Coding
303. (ATCG)31236964973696508Coding
304. (CAC)41237105183710529Coding
305. (CGC)41237255073725518Coding
306. (TGAT)31237618273761838Coding
307. (GGC)41237633503763361Coding
308. (ATAG)31237698373769848Non coding
309. (AAC)41237947393794750Coding
310. (ACCA)31238026733802684Coding
311. (TTAA)31238108563810867Non coding
312. (TCTA)31238253503825361Non coding
313. (GCG)41238415203841531Coding
314. (CAATAC)31838505523850569Coding
315. (ACTA)31238551973855208Non coding
316. (GCA)41238658443865855Coding
317. (ACC)41238701193870130Coding
318. (TCGA)31238751423875153Non coding
319. (ATC)41238945493894560Coding
320. (CTGG)31239097823909793Coding
321. (CCAG)31239283653928376Coding
322. (ACC)41239370433937054Coding
323. (CTC)51539509593950973Non coding
324. (ATGG)31239559443955955Coding
325. (CTGG)31240006624000673Coding
326. (TATC)31240119154011926Coding
327. (CCAA)31240195144019525Non coding
328. (ACAA)31240202014020212Non coding
329. (CCAAG)31540271034027117Coding
330. (GATC)31240342414034252Coding
331. (ATCCTT)31840634424063459Non coding
332. (TTC)51540650114065025Coding
333. (TATTTT)31840828764082893Coding-Non coding
334. (ATTG)31240931244093135Coding
335. (GCTG)31241094504109461Coding
336. (TGATCC)31841139014113918Coding
337. (CAA)41241163474116358Coding
338. (GTGATG)31841247424124759Coding
339. (CGAT)31241383844138395Coding
340. (AATT)31241406724140683Coding-Non coding
341. (TGG)51541589714158985Coding
342. (TGG)41241601564160167Coding
343. (ATCG)31241721484172159Coding
344. (GCT)41241730704173081Coding
345. (TTC)41241847884184799Coding
346. (AGCC)41641982214198236Coding
347. (CGC)41242058234205834Coding
348. (ATT)41242149354214946Non coding
349. (GTG)41242209604220971Coding
350. (CAA)41242273274227338Coding
351. (GCA)41242468004246811Coding
352. (GTT)41242556724255683Non coding
353. (GATC)31242701974270208Coding
354. (ATTT)31242878704287881Non coding
355. (AATT)41643047304304745Coding-Non coding
356. (AATT)31243092374309248Non coding
357. (TCAA)31243322754332286Coding-Non coding
358. (CAAA)31243454074345418Coding
359. (GTTT)31243571634357174Coding
360. (GTG)41243726774372688Coding
361. (CGAT)31244266884426699Coding
362. (CGAT)31244303304430341Coding
363. (CAG)41244455704445581Coding
364. (AATT)31244480654448076Non coding
365. (GATC)31245164004516411Coding
366. (ATTT)31245205134520524Coding
367. (CTT)41245319264531937Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.