CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Pseudanabaena sp. PCC 7367 (NC_019701 4557047 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 2   Overlapping Compound : 0
Perfect      : 367     Density of SSR      : 1SSR/ 12.35 kb   Average length of SSR  : 13.48 bp
Coding      : 236     Non-Coding           : 118   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 121 187 24 34 367
IMPERFECT 1 82 1478 1542 195 169 3467
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)4123996939980Coding
2. (GCT)4124624246253Coding
3. (CAC)4127399374004Coding
4. (ACC)412124874124885Coding
5. (CCA)412148189148200Coding
6. (ATT)412153263153274Coding
7. (GCC)412169950169961Coding
8. (CCA)412185228185239Coding
9. (CAA)412208898208909Coding
10. (CAC)412226386226397Coding
11. (CGC)412284284284295Coding
12. (ACC)412291432291443Coding
13. (CAC)412333417333428Coding
14. (TTA)412351151351162Non coding
15. (ATT)412354601354612Non coding
16. (GCT)412438823438834Coding
17. (AGT)412515806515817Non coding
18. (TGA)412522188522199Coding
19. (TCA)412535799535810Coding
20. (CAG)412559224559235Coding
21. (CCA)412636759636770Coding
22. (CAC)412664684664695Coding
23. (AAG)412681842681853Coding
24. (ATC)412742517742528Coding
25. (TCT)412794228794239Coding
26. (TCT)412795905795916Coding
27. (TCT)412816455816466Coding
28. (GGC)412828921828932Coding
29. (CAT)412836074836085Coding
30. (CCA)412976768976779Coding
31. (GGT)41211073941107405Coding
32. (CGC)41211357211135732Coding
33. (TGG)41211627761162787Coding
34. (GCT)51511758481175862Coding
35. (GCA)41211877241187735Coding
36. (GCA)41212824141282425Coding
37. (GGC)41212830961283107Coding
38. (GCA)41213105901310601Coding
39. (GTG)41213864791386490Coding
40. (CCG)41214017301401741Coding
41. (CGG)41214197881419799Coding
42. (AAG)41214465271446538Coding
43. (GCG)41214571201457131Coding
44. (CAG)41214787961478807Coding
45. (AGC)41216472551647266Coding
46. (CAG)41216878141687825Non coding
47. (ACC)41217064531706464Coding
48. (CCA)41218269411826952Coding
49. (CGG)41218511801851191Coding
50. (CTA)41218600131860024Non coding
51. (TGG)41218670561867067Coding
52. (TGA)41219172981917309Coding
53. (ATT)41219741971974208Coding
54. (ATG)51519921421992156Coding
55. (TAG)41220096822009693Coding
56. (CCA)41220736112073622Coding
57. (TCT)41222252702225281Coding
58. (AAG)51522516252251639Coding
59. (TGG)41222874712287482Coding
60. (TGG)41223011222301133Coding
61. (CGT)41223096192309630Coding
62. (AAT)41223187292318740Coding
63. (CCG)41223998902399901Coding
64. (GAT)41225569632556974Coding
65. (TCA)41225841402584151Coding
66. (TGG)41226465552646566Coding
67. (TGC)41226598762659887Non coding
68. (TGC)41226820822682093Coding
69. (TAA)41227448052744816Coding
70. (ACC)51527454472745461Coding
71. (AGA)41227468012746812Non coding
72. (CCG)41227581472758158Coding
73. (CTG)41228653942865405Coding
74. (GCA)41229405612940572Coding
75. (GGC)41229486682948679Coding
76. (GCC)41230099333009944Coding
77. (TGG)41230113413011352Coding
78. (TGG)41230171213017132Coding
79. (CTG)41230336743033685Coding
80. (CCA)51530371943037208Coding
81. (ATT)41230720133072024Coding
82. (GGT)41231392383139249Coding
83. (CCA)41231509383150949Coding
84. (CAG)41231705353170546Coding
85. (GAT)41232824023282413Coding
86. (CCA)41233021793302190Coding
87. (GGT)41233188453318856Coding
88. (AAT)41233517603351771Non coding
89. (GCA)41233557473355758Coding
90. (AAT)41233722473372258Coding
91. (GGC)41234417363441747Coding
92. (TGG)41234704733470484Coding
93. (GTG)41235577173557728Coding
94. (TCA)41235589233558934Coding
95. (CCG)41235961163596127Coding
96. (TGC)41236421743642185Coding
97. (CAC)41237105183710529Coding
98. (CGC)41237255073725518Coding
99. (GGC)41237633503763361Coding
100. (AAC)41237947393794750Coding
101. (GCG)41238415203841531Coding
102. (GCA)41238658443865855Coding
103. (ACC)41238701193870130Coding
104. (ATC)41238945493894560Coding
105. (ACC)41239370433937054Coding
106. (CTC)51539509593950973Non coding
107. (TTC)51540650114065025Coding
108. (CAA)41241163474116358Coding
109. (TGG)51541589714158985Coding
110. (TGG)41241601564160167Coding
111. (GCT)41241730704173081Coding
112. (TTC)41241847884184799Coding
113. (CGC)41242058234205834Coding
114. (ATT)41242149354214946Non coding
115. (GTG)41242209604220971Coding
116. (CAA)41242273274227338Coding
117. (GCA)41242468004246811Coding
118. (GTT)41242556724255683Non coding
119. (GTG)41243726774372688Coding
120. (CAG)41244455704445581Coding
121. (CTT)41245319264531937Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.