CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Pseudanabaena sp. PCC 7367 (NC_019701 4557047 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 2   Overlapping Compound : 0
Perfect      : 367     Density of SSR      : 1SSR/ 12.35 kb   Average length of SSR  : 13.48 bp
Coding      : 236     Non-Coding           : 118   Coding and Non-Coding : 15
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 121 187 24 34 367
IMPERFECT 1 82 1478 1542 195 169 3467
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCTG)31242164227Coding
2. (TAAT)3122211622127Non coding
3. (AATC)3124323643247Non coding
4. (GCTA)312106718106729Coding-Non coding
5. (TTTA)312217144217155Non coding
6. (GATC)312223288223299Coding
7. (AGAA)312232844232855Coding
8. (CAGT)416280878280893Non coding
9. (GCCT)312291901291912Coding
10. (TCGC)312319602319613Coding
11. (CAAC)312351297351308Coding
12. (CAAT)312363927363938Non coding
13. (AATT)312367924367935Coding
14. (ACTA)416369884369899Non coding
15. (AGCA)312379781379792Coding
16. (ATTA)312403966403977Non coding
17. (CAAC)312415335415346Coding
18. (AACT)312466536466547Non coding
19. (AATT)312501755501766Non coding
20. (CTAT)312510332510343Non coding
21. (CGAT)312544959544970Coding
22. (GTCA)312558212558223Non coding
23. (TAAT)520569378569397Non coding
24. (GTAG)312575467575478Non coding
25. (TGGC)312616647616658Coding
26. (GCCA)312626898626909Coding
27. (GCAA)312641687641698Coding
28. (TCAG)312683144683155Coding
29. (ATCG)312700276700287Coding
30. (TGGG)312710507710518Coding
31. (AACT)312717340717351Non coding
32. (AACT)312717354717365Non coding
33. (CTGG)312767020767031Coding
34. (CGAT)312841497841508Coding
35. (TATT)312880920880931Coding
36. (TTTA)312891591891602Non coding
37. (CTGG)312902844902855Coding
38. (ATCG)312914424914435Coding
39. (TTAT)312924382924393Non coding
40. (ATTA)312930670930681Non coding
41. (ATCG)312950636950647Coding
42. (ATTG)312990511990522Non coding
43. (AATT)31210194611019472Non coding
44. (TAGC)31210511631051174Non coding
45. (TCGA)31210542551054266Coding
46. (GTTG)31210622481062259Coding
47. (AATA)31210844211084432Non coding
48. (ATCG)31211088501108861Coding
49. (ATTA)31211130971113108Non coding
50. (TTAA)31211150201115031Non coding
51. (GCCA)31211380861138097Coding
52. (TTAA)31211738971173908Coding-Non coding
53. (ATCA)31211789901179001Non coding
54. (TCGA)31212075321207543Coding
55. (TAAG)31212084561208467Non coding
56. (CTAG)31212112001211211Coding-Non coding
57. (TTGA)31212268201226831Coding
58. (ATCG)31212337881233799Coding
59. (CCAG)31212361711236182Coding
60. (ATTA)31212924791292490Non coding
61. (TCAA)31213432041343215Coding
62. (ATAA)31213450241345035Coding
63. (CCAA)31213646181364629Coding
64. (CGAT)31214389701438981Coding
65. (CGAT)31214548111454822Coding
66. (TGGC)31214634581463469Coding
67. (TTAA)31214676531467664Non coding
68. (ATTG)31215029231502934Non coding
69. (AGCC)31215333551533366Coding
70. (GATT)72815761101576137Non coding
71. (TGGC)31215955151595526Coding
72. (ATAG)31216305701630581Non coding
73. (CGAT)31216365171636528Coding
74. (TTGA)31216773031677314Non coding
75. (TTGG)31217039601703971Non coding
76. (ACTA)31217302321730243Non coding
77. (CTAC)31217600591760070Coding
78. (AAAG)31217907721790783Non coding
79. (GGCT)31217912961791307Coding
80. (CCAT)31218270561827067Coding
81. (TACC)41618446291844644Non coding
82. (ATAA)52018449111844930Non coding
83. (CTTC)31218558831855894Coding
84. (CTAC)31218606081860619Coding
85. (ATCG)31219485601948571Coding
86. (CGAT)31219748461974857Coding
87. (ATAG)31219778421977853Non coding
88. (GATC)31219974301997441Coding
89. (CGAT)31220014772001488Coding
90. (GATT)31220100182010029Non coding
91. (ACTA)52020159142015933Non coding
92. (CGAT)31220447472044758Coding
93. (AGGT)31221109322110943Coding
94. (ATCG)31221377242137735Coding
95. (TGAT)31221532542153265Coding
96. (CGAT)41622006782200693Coding
97. (GTTA)31222212512221262Coding-Non coding
98. (AGTA)31222644852264496Non coding
99. (ATCT)31222833372283348Coding
100. (TCGA)31223138012313812Non coding
101. (ATTA)31224136402413651Non coding
102. (AATT)31224754852475496Non coding
103. (AGGT)31224883172488328Coding
104. (GGTG)31225502682550279Coding
105. (CTAG)31225543482554359Non coding
106. (TTTA)31225610092561020Coding-Non coding
107. (TAGT)31225694422569453Non coding
108. (CCAG)31226357682635779Coding
109. (ATCG)31226515492651560Non coding
110. (CGAT)31226694632669474Coding
111. (TTGA)31226742072674218Non coding
112. (CGAT)31226771872677198Coding
113. (TACA)31226868332686844Non coding
114. (TATC)31228049792804990Non coding
115. (TAAT)31228096632809674Non coding
116. (ATTT)31228201422820153Non coding
117. (GTTG)31228312142831225Coding
118. (CAAT)31228396262839637Coding
119. (AATT)31228495992849610Coding
120. (CTAA)31228612472861258Non coding
121. (AATT)31228802502880261Coding
122. (AAAT)31229020262902037Non coding
123. (TTAA)31229055352905546Non coding
124. (GATC)31229587942958805Coding
125. (TATG)31229679532967964Coding
126. (ATCG)31229909622990973Coding
127. (CGAT)31230164123016423Coding
128. (TTAA)31230276573027668Non coding
129. (AACT)31230594973059508Coding
130. (TGAT)31230625973062608Coding
131. (TTAA)31231316153131626Non coding
132. (ATAG)31231332813133292Non coding
133. (GATA)31231499433149954Non coding
134. (GATC)31231822623182273Coding
135. (TTTA)31231859603185971Non coding
136. (ATCG)31231933063193317Coding
137. (GATT)31232326983232709Non coding
138. (TAGT)31232617123261723Non coding
139. (TCAA)41632696573269672Non coding
140. (AATC)31232931773293188Non coding
141. (TGCT)31233597953359806Coding
142. (ATTT)31234740983474109Coding
143. (CGAT)31234962993496310Coding
144. (GATC)31235198853519896Coding
145. (TTAA)31235610433561054Non coding
146. (AATA)31235613833561394Non coding
147. (AATT)31235788063578817Non coding
148. (TATC)31236117653611776Non coding
149. (AAGA)31236257243625735Coding
150. (ATTA)31236328913632902Non coding
151. (TAAC)52036456153645634Coding-Non coding
152. (TAAG)31236488013648812Non coding
153. (AAAC)31236962673696278Coding
154. (ATCG)31236964973696508Coding
155. (TGAT)31237618273761838Coding
156. (ATAG)31237698373769848Non coding
157. (ACCA)31238026733802684Coding
158. (TTAA)31238108563810867Non coding
159. (TCTA)31238253503825361Non coding
160. (ACTA)31238551973855208Non coding
161. (TCGA)31238751423875153Non coding
162. (CTGG)31239097823909793Coding
163. (CCAG)31239283653928376Coding
164. (ATGG)31239559443955955Coding
165. (CTGG)31240006624000673Coding
166. (TATC)31240119154011926Coding
167. (CCAA)31240195144019525Non coding
168. (ACAA)31240202014020212Non coding
169. (GATC)31240342414034252Coding
170. (ATTG)31240931244093135Coding
171. (GCTG)31241094504109461Coding
172. (CGAT)31241383844138395Coding
173. (AATT)31241406724140683Coding-Non coding
174. (ATCG)31241721484172159Coding
175. (AGCC)41641982214198236Coding
176. (GATC)31242701974270208Coding
177. (ATTT)31242878704287881Non coding
178. (AATT)41643047304304745Coding-Non coding
179. (AATT)31243092374309248Non coding
180. (TCAA)31243322754332286Coding-Non coding
181. (CAAA)31243454074345418Coding
182. (GTTT)31243571634357174Coding
183. (CGAT)31244266884426699Coding
184. (CGAT)31244303304430341Coding
185. (AATT)31244480654448076Non coding
186. (GATC)31245164004516411Coding
187. (ATTT)31245205134520524Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.