CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Rivularia sp. PCC 7116 (NC_019678 8698464 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 507     Density of SSR      : 1SSR/ 17.16 kb   Average length of SSR  : 12.98 bp
Coding      : 342     Non-Coding           : 153   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 14 208 219 31 35 507
IMPERFECT 2 313 3340 2931 333 294 7213
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTAGC)318253215253232Coding
2. (ACCAGA)424267369267392Coding
3. (GGTGCT)318775354775371Coding
4. (GAATTT)53010706841070713Coding
5. (AAGGGT)31811026661102683Coding
6. (AAAAGT)31815722391572256Non coding
7. (ACCAAC)31816557941655811Coding
8. (AAACGG)31819741031974120Coding
9. (TCGTCT)31821118032111820Coding
10. (AACTCA)31824160122416029Coding
11. (CGGTAG)53024668882466917Coding
12. (TTATCT)31827797432779760Non coding
13. (CGGGTG)31835081323508149Coding
14. (TAGCCA)31845616804561697Coding
15. (TCTACA)31845951524595169Coding
16. (AATGTT)31846420214642038Non coding
17. (TCAAGA)31851451355145152Coding
18. (AAATCT)31851846715184688Coding
19. (TAAAAA)31857171135717130Non coding
20. (AAATCA)31857598735759890Coding
21. (TGGTGA)31858590345859051Coding
22. (GGTGTT)31859192925919309Coding
23. (CAAAAC)31864843176484334Coding
24. (TTTGAT)31867008176700834Non coding
25. (GGATTG)31869689216968938Coding
26. (TAAACT)31871112667111283Coding
27. (AATTTA)31871780467178063Non coding
28. (TTTATA)31872436187243635Non coding
29. (CAGCAC)42475072357507258Coding
30. (AATCTA)31875285117528528Coding
31. (AAAATC)31876254567625473Non coding
32. (CACCTG)31877188107718827Coding
33. (TTGTAT)31877444487744465Non coding
34. (GCTTCT)31878137697813786Coding
35. (AAAATT)31880213668021383Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.