CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Rivularia sp. PCC 7116 (NC_019678 8698464 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 507     Density of SSR      : 1SSR/ 17.16 kb   Average length of SSR  : 12.98 bp
Coding      : 342     Non-Coding           : 153   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 14 208 219 31 35 507
IMPERFECT 2 313 3340 2931 333 294 7213
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATTAA)315759133759147Non coding
2. (TGGTG)315957928957942Non coding
3. (TTTTA)31510823541082368Non coding
4. (CAAAT)31512843181284332Coding
5. (GAATT)31512859511285965Coding
6. (TTTAA)31513866101386624Non coding
7. (TTATT)31515254701525484Non coding
8. (GTTTG)31520517752051789Coding
9. (GAGAA)31524781922478206Non coding
10. (TTTAT)31525032792503293Non coding
11. (TAAGC)31525201142520128Non coding
12. (AAAAT)31528716742871688Non coding
13. (CAAAT)31533672673367281Non coding
14. (TAATT)42042819974282016Non coding
15. (TAAAT)31548286814828695Non coding
16. (AAATT)31550030135003027Non coding
17. (ATTAA)31550087505008764Non coding
18. (TCAAT)31553022385302252Non coding
19. (TTAAT)31553365895336603Non coding
20. (GGGTT)31558374335837447Coding
21. (GTTTA)31559680485968062Coding-Non coding
22. (TAATT)31560232676023281Non coding
23. (ATGCT)31563656756365689Non coding
24. (TTTTG)31566012316601245Non coding
25. (TTAAC)31567476576747671Non coding
26. (AATTG)31571575727157586Non coding
27. (TGGGC)31573084327308446Coding
28. (TTTAT)31573946327394646Non coding
29. (TTTTG)31577233057723319Coding
30. (AAATC)31578959977896011Coding
31. (AATTA)31581926828192696Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.