CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Rivularia sp. PCC 7116 (NC_019678 8698464 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 507     Density of SSR      : 1SSR/ 17.16 kb   Average length of SSR  : 12.98 bp
Coding      : 342     Non-Coding           : 153   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 14 208 219 31 35 507
IMPERFECT 2 313 3340 2931 333 294 7213
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GAT)4128390783918Coding
2. (CCA)412102003102014Coding
3. (TGC)412143759143770Coding
4. (AGC)412172474172485Coding
5. (GCT)515234231234245Coding
6. (GCT)412259388259399Coding
7. (AGC)412263002263013Coding
8. (TTG)515294994295008Coding
9. (GGA)412438568438579Coding
10. (CAG)412451536451547Coding
11. (GCA)412452064452075Coding
12. (GTA)412457759457770Coding
13. (TCT)412474452474463Coding
14. (TCT)412532482532493Coding
15. (TGC)412580356580367Coding
16. (AAT)412581496581507Coding
17. (TGC)412590820590831Coding
18. (AGC)412628197628208Coding
19. (ATT)412657471657482Non coding
20. (GAA)515686395686409Coding
21. (CCA)618689903689920Coding
22. (AGA)412716553716564Coding
23. (GCT)412734648734659Coding
24. (CTC)412789326789337Coding
25. (TCT)412845513845524Coding
26. (AGC)412882752882763Coding
27. (TAC)412915076915087Coding
28. (CCA)412967189967200Coding
29. (TTA)41210090591009070Coding
30. (TAG)41210290301029041Coding
31. (TGG)41210693771069388Coding
32. (CTG)41212742561274267Coding
33. (CAT)41212909781290989Coding
34. (GAA)51512932311293245Coding
35. (GAA)41213148841314895Coding
36. (CTA)41213347161334727Coding
37. (TAA)41213864941386505Non coding
38. (ACC)41214505701450581Coding
39. (GTG)41214904821490493Coding
40. (GAG)41215552941555305Non coding
41. (GTA)41216657781665789Coding
42. (TAA)41217158481715859Coding
43. (TAA)41217276501727661Coding
44. (ATG)51517528501752864Coding
45. (CAG)41217960551796066Coding
46. (TTG)41218011211801132Coding
47. (GCT)41218445711844582Coding
48. (AGC)41218735411873552Coding
49. (TGA)41218906741890685Coding
50. (CAC)41219218201921831Coding
51. (TGC)51519272721927286Coding
52. (ATG)41220001212000132Coding
53. (AAT)41220200532020064Non coding
54. (TAG)41220314292031440Coding
55. (AGT)41220794912079502Coding
56. (AAC)41221676162167627Coding
57. (TTC)41221883142188325Coding
58. (CAG)41223155442315555Coding
59. (CAC)41223311722331183Coding
60. (GTT)41223629212362932Coding
61. (TTC)51523998662399880Coding
62. (TCT)41225444932544504Coding
63. (ACA)41226148142614825Coding
64. (AGC)41226307702630781Coding
65. (TGA)41226391452639156Coding
66. (AGC)41226492432649254Coding
67. (CTA)41226497912649802Coding
68. (TTC)41227531582753169Coding
69. (TCT)41227605992760610Non coding
70. (CTG)41227638962763907Coding
71. (TGG)41228117232811734Coding
72. (CAT)41228305522830563Coding
73. (AAG)41228407932840804Coding
74. (TTG)41228529792852990Coding
75. (AGC)41229218982921909Coding
76. (TGC)41229241442924155Coding
77. (GCA)41229555792955590Coding
78. (CTT)41229769472976958Coding
79. (GCA)41230024103002421Coding
80. (TGC)51530483933048407Coding
81. (AAG)41231005263100537Coding
82. (CTG)41231969593196970Coding
83. (CTG)41232892193289230Coding
84. (TGA)41233659943366005Coding
85. (GCA)41233997173399728Coding
86. (CTG)41234108883410899Coding
87. (CTG)41235070423507053Coding
88. (GTG)41235295633529574Coding
89. (TTC)41235500193550030Coding
90. (TGG)41235583983558409Coding
91. (CAT)41238351123835123Non coding
92. (GTG)41239832513983262Coding
93. (CAG)41240514304051441Coding
94. (GCT)41240772894077300Coding
95. (TTC)41240826284082639Coding
96. (AGG)41241612344161245Coding
97. (ATT)41241672714167282Coding
98. (TGC)41241808434180854Coding
99. (TGC)41241809604180971Coding
100. (CGT)41242513114251322Coding
101. (GCT)41242906164290627Coding
102. (CAC)41243072984307309Coding
103. (ACC)41243629954363006Coding
104. (TTA)41244174174417428Non coding
105. (GCA)41244272814427292Coding
106. (ATA)41244635054463516Coding
107. (GCT)41244716224471633Coding
108. (ATC)41245216404521651Coding
109. (CAG)41245764044576415Coding
110. (TTA)41245882424588253Coding
111. (ATT)41246336524633663Non coding
112. (ATT)41246439114643922Coding
113. (TCG)41246562014656212Coding
114. (CTC)51546879684687982Coding
115. (TGC)41247144864714497Coding
116. (TAT)41247472984747309Coding
117. (GGT)41248322504832261Coding
118. (GCT)41248586524858663Coding
119. (GAA)41249374624937473Coding
120. (TAA)41249748264974837Coding
121. (TGC)41250182885018299Coding
122. (TTC)41250617985061809Coding
123. (CAG)41250653535065364Coding
124. (CAA)41251268525126863Coding
125. (ATT)61851471515147168Coding
126. (TTC)41251762935176304Coding
127. (AAT)41251828955182906Non coding
128. (GCA)41251878815187892Coding
129. (GCT)41252728055272816Coding
130. (CTG)41253677785367789Coding
131. (AAG)41253756775375688Coding
132. (TAT)41254440915444102Non coding
133. (AGC)51554665925466606Coding
134. (TGC)41255597375559748Coding
135. (GAA)41255759675575978Coding
136. (CAG)51556025735602587Coding
137. (AGC)41256078115607822Coding
138. (TCT)41256245955624606Coding
139. (AAT)41256611595661170Non coding
140. (TCT)61857008555700872Coding
141. (AGC)41257144925714503Coding
142. (TGA)41257966475796658Coding
143. (AGG)41258316185831629Coding
144. (GTT)41258382995838310Coding
145. (GTG)41258408175840828Coding
146. (CAG)41258550655855076Coding
147. (TCT)41259379565937967Coding
148. (ATG)41259390915939102Coding
149. (AGC)41260250236025034Coding
150. (ACC)41261256236125634Coding
151. (CTG)41262163466216357Coding
152. (ACC)41262912346291245Coding
153. (GAT)41263604096360420Coding
154. (AAC)41263639056363916Coding
155. (AAC)41263639236363934Coding
156. (ATC)41263671646367175Coding
157. (TAT)41264067386406749Coding
158. (AAT)41265312696531280Coding
159. (GAA)41265759026575913Coding
160. (TAT)41265852426585253Coding
161. (TTA)41266279546627965Coding
162. (ACT)41267105046710515Coding
163. (GCT)41267149996715010Coding
164. (AAG)41268481116848122Coding
165. (TCT)41268538136853824Coding
166. (AGC)41269152436915254Coding
167. (GAA)41269274176927428Coding
168. (CCA)41269967486996759Coding
169. (CTG)41270109717010982Coding
170. (TCA)41270160587016069Coding
171. (CAG)41270369847036995Coding
172. (GGT)61870946837094700Coding
173. (ACC)41272318117231822Coding
174. (ACC)41272506907250701Coding
175. (GAA)41273287737328784Coding
176. (CAG)41274201207420131Coding
177. (AGA)41275044117504422Coding
178. (AGC)41275194097519420Coding
179. (TTC)41275210987521109Coding
180. (ATT)41275913007591311Non coding
181. (CTG)41277051707705181Coding
182. (AGA)41277151077715118Coding
183. (CTG)41277316587731669Coding
184. (TCT)41277654857765496Coding
185. (TAA)41278943507894361Coding
186. (TTC)41279117737911784Coding
187. (TTA)41279748467974857Coding
188. (TGA)41280034088003419Coding
189. (CAT)41280461348046145Coding
190. (TGG)41280802268080237Coding
191. (TAA)41281140118114022Non coding
192. (ATC)41281511628151173Non coding
193. (AAG)41281987858198796Non coding
194. (CAG)41282047808204791Coding
195. (ATG)41282474308247441Coding
196. (TAA)41282818318281842Non coding
197. (CAG)41283360248336035Coding
198. (ATA)41283557618355772Coding
199. (CTG)41283627658362776Coding
200. (TAT)41284021758402186Non coding
201. (CGA)41284364268436437Coding
202. (AGC)51584977338497747Coding
203. (GCT)41284997398499750Coding
204. (GCA)41285716648571675Coding
205. (AAT)41286092308609241Coding
206. (CCA)72186304268630446Coding
207. (CCA)41286305648630575Coding
208. (CCA)41286311708631181Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.