CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Rivularia sp. PCC 7116 (NC_019678 8698464 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 507     Density of SSR      : 1SSR/ 17.16 kb   Average length of SSR  : 12.98 bp
Coding      : 342     Non-Coding           : 153   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 14 208 219 31 35 507
IMPERFECT 2 313 3340 2931 333 294 7213
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCTG)3121151511526Coding
2. (TTGA)3123636836379Coding
3. (AATC)3125972059731Coding-Non coding
4. (ATAA)3126510165112Non coding
5. (ATTT)312120492120503Coding
6. (TATT)312178077178088Coding
7. (TAAA)312244152244163Non coding
8. (TTAT)312244901244912Non coding
9. (TAAA)312260888260899Coding-Non coding
10. (AATC)312295515295526Non coding
11. (TAAT)312303762303773Coding
12. (ATAA)312319910319921Coding
13. (ATAC)312350447350458Coding
14. (TTTG)312360696360707Coding
15. (AATA)312419957419968Non coding
16. (AATA)312423358423369Coding
17. (TAAA)312442152442163Non coding
18. (TTCC)312465275465286Coding
19. (CTTG)312493151493162Coding
20. (TAAA)312582814582825Non coding
21. (ATTT)312592718592729Non coding
22. (ATTT)312595163595174Non coding
23. (TATT)312627957627968Non coding
24. (AATC)312644334644345Coding
25. (GTTT)312685925685936Coding
26. (GAAA)312713946713957Coding
27. (TATT)312733236733247Non coding
28. (AATA)312791194791205Coding
29. (TTTG)312858953858964Coding
30. (AATA)312902033902044Coding
31. (AAGC)312945405945416Coding
32. (AATT)312972425972436Coding
33. (GTTA)312983384983395Non coding
34. (GCAA)31210631191063130Coding
35. (GGGA)31211168971116908Non coding
36. (TACT)31211192541119265Coding
37. (TTAT)31211405911140602Coding
38. (TTGT)31211593231159334Non coding
39. (ACAA)31212292671229278Non coding
40. (AGCA)31212293381229349Non coding
41. (AAAC)31213669861366997Non coding
42. (TCAT)31213763731376384Coding
43. (TTAT)31213984961398507Non coding
44. (TTTA)31214456891445700Coding
45. (AATA)31214534821453493Non coding
46. (ATTT)31214614551461466Coding
47. (TTGA)31215094631509474Coding
48. (TCAC)31215691331569144Non coding
49. (ATTT)31215807801580791Coding
50. (TTTA)31216322651632276Coding
51. (CAAT)31216411131641124Coding
52. (GAAT)31216750791675090Coding
53. (AAAT)31218250181825029Non coding
54. (TAAA)31218844131884424Coding
55. (CAAA)31220192162019227Non coding
56. (GAGC)31220415562041567Coding
57. (AACT)31221218992121910Coding
58. (GAGG)31221477442147755Non coding
59. (AACA)31221931952193206Coding
60. (ATTT)31222048622204873Non coding
61. (GAGG)31222082442208255Non coding
62. (TTAG)31222502532250264Coding
63. (CGTG)31222666672266678Coding
64. (GCCA)31222946952294706Coding
65. (AATT)31223126852312696Coding
66. (TTAC)41623148102314825Coding-Non coding
67. (ATTA)31223721982372209Coding-Non coding
68. (TAAA)31224115702411581Non coding
69. (TTTA)31224242642424275Coding
70. (AATT)31224752422475253Coding
71. (AAAT)31224766122476623Non coding
72. (CAAG)31225744462574457Non coding
73. (AATC)31225910652591076Coding
74. (CGAA)31226111222611133Coding
75. (TAAA)31226297592629770Coding
76. (TAAT)31227192722719283Non coding
77. (TTTA)31227445132744524Coding
78. (AAAT)31228108252810836Coding
79. (CTTT)31228466732846684Coding
80. (CTCA)31228717482871759Non coding
81. (GAAA)31228967742896785Coding
82. (ACAA)31229221462922157Coding
83. (CAAC)31229341832934194Coding
84. (GAGG)31229424192942430Coding
85. (ACTT)31229933862993397Non coding
86. (TTAT)31230527263052737Non coding
87. (GATT)31230810663081077Coding
88. (TGAT)31231116753111686Coding-Non coding
89. (TTGT)31231317693131780Non coding
90. (AAGA)31231610993161110Coding
91. (TTAT)31231713743171385Coding-Non coding
92. (AGCA)31232095433209554Coding
93. (GCTA)31232678473267858Coding-Non coding
94. (AAAC)31232975253297536Coding
95. (TTTA)31233184233318434Non coding
96. (TTAT)31233308303330841Non coding
97. (AATT)31233327793332790Coding
98. (CAAT)31233766743376685Non coding
99. (GTGC)31233968333396844Coding
100. (TATT)31234029753402986Coding
101. (GAAA)31234561903456201Coding
102. (ACAA)31234906573490668Non coding
103. (GAGT)72837001533700180Non coding
104. (GAGT)31237001933700204Non coding
105. (GAGT)31237002093700220Non coding
106. (CTTC)31237154173715428Coding
107. (TAAT)31238101263810137Non coding
108. (GGAG)31238310673831078Non coding
109. (TATT)31238997443899755Non coding
110. (GGTT)31239505333950544Non coding
111. (AATT)31239779953978006Coding
112. (AAAT)31239997653999776Coding
113. (AATC)31240384504038461Coding
114. (TTTG)31240415424041553Non coding
115. (ATAA)31240464434046454Coding
116. (AATA)31240669394066950Non coding
117. (TGAT)31243194994319510Coding
118. (CATA)31243279544327965Coding
119. (TAAT)31243901894390200Non coding
120. (ATTT)31243957494395760Non coding
121. (GGGA)31243988604398871Non coding
122. (ATTT)31244007964400807Non coding
123. (TTAT)31244431284443139Non coding
124. (CGAA)31245136944513705Coding
125. (TTTA)31245322314532242Non coding
126. (ATAA)31245368674536878Coding
127. (CAAC)31245429124542923Coding
128. (TAAT)31245852454585256Coding-Non coding
129. (AATT)31246418024641813Non coding
130. (GCAC)31246820374682048Coding-Non coding
131. (CTTG)31247122474712258Coding
132. (TATT)31247497164749727Coding
133. (GAGG)31247744464774457Non coding
134. (AAAT)31248028084802819Coding
135. (AGCT)31248099604809971Coding
136. (ATTA)31248170174817028Non coding
137. (TTGT)31248208384820849Non coding
138. (TTTG)31248314474831458Coding
139. (TTGC)31249022194902230Coding
140. (TAAA)31249031734903184Non coding
141. (ATAC)31249564034956414Non coding
142. (GAGG)41649929254992940Non coding
143. (GCTT)31250035945003605Coding
144. (TTTC)31250533495053360Coding
145. (TAAT)31251340435134054Non coding
146. (GCAA)31251703235170334Coding
147. (ACCA)31252562955256306Coding
148. (TAAG)31252606125260623Non coding
149. (CAAA)31252895015289512Coding
150. (CAAC)31253225205322531Coding
151. (GTTT)31253300535330064Coding
152. (AAGC)31255148535514864Coding
153. (TAAA)31255438705543881Non coding
154. (AATT)31255632145563225Non coding
155. (TAAA)31256509545650965Coding
156. (ATTA)31257345825734593Non coding
157. (TAAT)41657537055753720Non coding
158. (ACCA)31257626475762658Coding
159. (GATG)31259409165940927Coding
160. (CTTG)31259409925941003Coding
161. (ATTT)31259571315957142Coding
162. (GAGG)31259587585958769Non coding
163. (GAGG)52059587865958805Non coding
164. (GAGG)72859588105958837Non coding
165. (ATGT)31259862045986215Coding
166. (AAGC)31259893435989354Coding
167. (CTCC)31260394116039422Non coding
168. (CTCC)41660394276039442Non coding
169. (AAGT)31260799246079935Non coding
170. (TAAA)31261131636113174Non coding
171. (TATT)31263808066380817Non coding
172. (AATT)31264202806420291Non coding
173. (CTCC)41664871406487155Non coding
174. (CTCC)52064871846487203Non coding
175. (TTGT)31265086646508675Coding
176. (AGAA)31265094776509488Non coding
177. (ATTA)31265232306523241Coding
178. (AAGA)31265871306587141Coding
179. (CAAC)31266192566619267Coding
180. (ATTT)31266492706649281Non coding
181. (ATTT)31267432466743257Coding-Non coding
182. (TTTA)31267556386755649Non coding
183. (TTGA)31267624226762433Coding
184. (TAAT)31267647256764736Coding-Non coding
185. (ATAG)41667730246773039Coding
186. (ATTG)31268428076842818Coding
187. (GCAA)31269731566973167Coding
188. (ATTT)31269753466975357Coding
189. (TTAT)31270045977004608Coding
190. (AAAT)31270076757007686Non coding
191. (ATAA)31270969767096987Coding
192. (ATAA)31271273487127359Non coding
193. (ATTA)31271332577133268Non coding
194. (TCCA)31271341727134183Coding
195. (CCAC)31271349537134964Coding
196. (AAAG)31271529727152983Coding
197. (TTTC)31272078757207886Coding
198. (TTGA)31272163087216319Non coding
199. (AATT)31272883397288350Coding
200. (TTGC)31273394137339424Coding
201. (GTTT)31273729767372987Coding
202. (TTTC)31274877087487719Coding
203. (AAGC)31274936547493665Coding
204. (AATT)31275009987501009Coding
205. (ATAA)31275771357577146Non coding
206. (ATAA)31277195337719544Non coding
207. (TTGA)31277431027743113Non coding
208. (CAGC)31277441687744179Coding
209. (GATT)31277600517760062Coding
210. (GGAG)41678031777803192Coding
211. (GAGG)31278032027803213Coding
212. (AACA)31278471077847118Coding
213. (AAAT)31279196397919650Non coding
214. (ATTG)31280212848021295Non coding
215. (CACT)31280245468024557Non coding
216. (ATTT)31281056178105628Non coding
217. (ATTA)31281745148174525Non coding
218. (ATTA)31284021338402144Non coding
219. (AAAT)31285540878554098Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.