CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Stanieria cyanosphaera PCC 7437 (NC_019748 5041210 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 406     Density of SSR      : 1SSR/ 12.39 kb   Average length of SSR  : 12.63 bp
Coding      : 313     Non-Coding           : 78   Coding and Non-Coding : 16
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 218 160 12 15 406
IMPERFECT 15 124 2507 1961 296 162 5065
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTA)3121431314324Coding
2. (AGC)4121939019401Non coding
3. (AGAT)3122135421365Coding
4. (AGC)4123890438915Coding
5. (GATT)3124747047481Non coding
6. (TAA)4127311873129Coding
7. (ATT)4128582185832Non coding
8. (AGA)4129213592146Coding
9. (AATT)3129298993000Coding
10. (AGC)412112356112367Coding
11. (AATT)312131571131582Coding
12. (CTG)412138496138507Non coding
13. (ATT)412147206147217Coding
14. (GTTGGG)318152734152751Coding
15. (AGT)412160907160918Coding
16. (ATC)412161748161759Coding
17. (AGA)412190918190929Non coding
18. (TATT)312191841191852Coding
19. (TAA)412201232201243Coding
20. (CTC)412204552204563Coding
21. (GAA)412217263217274Coding
22. (AATT)312225246225257Coding
23. (AATT)312253836253847Coding
24. (TCT)412256210256221Non coding
25. (GGTT)312261124261135Coding
26. (TAA)515263683263697Coding
27. (ATTT)312268410268421Non coding
28. (CTG)412275320275331Coding
29. (AGC)412279544279555Coding
30. (AAATT)315293283293297Non coding
31. (AACT)312299148299159Coding
32. (TTGA)312303717303728Coding
33. (TAAA)312305994306005Coding
34. (TTG)412312349312360Coding
35. (AACT)312387486387497Coding
36. (TAAT)312391899391910Coding
37. (AAG)412396901396912Coding
38. (GCT)515414780414794Coding
39. (AAAT)312416589416600Non coding
40. (AATA)312419984419995Non coding
41. (GTC)412421692421703Coding
42. (CTA)412422990423001Coding
43. (TATT)312423574423585Coding-Non coding
44. (AATG)312425534425545Non coding
45. (ACC)412437531437542Coding
46. (TTAAT)315479527479541Coding
47. (ATT)412504753504764Coding
48. (TTAA)312507200507211Non coding
49. (ATAA)312507364507375Non coding
50. (GAA)412510636510647Coding
51. (TTG)412522048522059Coding
52. (TGC)412551223551234Coding
53. (TAA)412555224555235Non coding
54. (GCA)412562171562182Coding
55. (TTTAA)315562913562927Coding-Non coding
56. (TTGG)312573215573226Coding
57. (TAT)515586882586896Coding
58. (TAA)412619026619037Coding
59. (ATG)412620353620364Non coding
60. (AAAT)312622644622655Non coding
61. (TAAA)312630409630420Coding
62. (CTT)412650617650628Coding
63. (GTAAA)315677495677509Coding
64. (TTAA)312689630689641Coding
65. (TCA)412689769689780Coding
66. (GAA)412692555692566Coding
67. (TAA)412696522696533Coding
68. (CAT)412698806698817Coding
69. (ATAA)312715485715496Non coding
70. (ATT)412736583736594Coding
71. (GCT)412751144751155Coding
72. (TTG)412757590757601Coding
73. (CCAA)312771568771579Coding
74. (TAAT)312786977786988Coding-Non coding
75. (TTAA)312807760807771Coding-Non coding
76. (TAAAAA)318809109809126Coding
77. (CAA)412810323810334Coding
78. (TTA)412828263828274Coding
79. (ATGA)312828487828498Coding
80. (TAAT)312849407849418Coding
81. (TAG)412852569852580Coding
82. (AGC)412861985861996Coding
83. (TTGA)312891655891666Coding
84. (TTCT)312899182899193Coding
85. (AGCACC)318932218932235Coding
86. (TTTTA)315950810950824Non coding
87. (AATC)312961337961348Coding
88. (CCA)412961685961696Coding
89. (TTAG)31210174531017464Non coding
90. (TCT)41210414991041510Coding
91. (TAG)41210758001075811Coding
92. (ACA)41210809751080986Coding
93. (TTC)41210973391097350Coding
94. (AATA)31211035391103550Coding
95. (AAAT)31211147291114740Coding
96. (CTG)41211224551122466Coding
97. (TTA)41211369111136922Coding
98. (GTAA)31211382881138299Coding
99. (AAAT)31211383821138393Coding
100. (AAAT)31211393561139367Coding
101. (TTGA)41611543341154349Coding
102. (TTTA)31211555131155524Coding
103. (CAAA)31211599991160010Coding
104. (TACT)31211852611185272Non coding
105. (AATC)31211941221194133Coding
106. (TTTCTT)31812004111200428Coding
107. (TTTA)31212088831208894Coding
108. (GCA)41212200751220086Coding
109. (AAAT)31212428661242877Coding
110. (AGC)41212507741250785Coding
111. (TGC)41212565971256608Non coding
112. (TCA)41212674021267413Coding
113. (TCT)41212703801270391Coding
114. (AATT)31212793631279374Non coding
115. (CAAA)31213571601357171Non coding
116. (AGC)41213590101359021Coding
117. (TTTA)31213651841365195Coding
118. (CAG)41213750551375066Coding
119. (GCA)41213770651377076Coding
120. (TGG)51513786241378638Coding
121. (ACCA)31213806561380667Coding
122. (GGTT)31213845951384606Coding
123. (ATT)41213846991384710Coding
124. (GAA)51514012081401222Coding
125. (GAA)41214015801401591Coding
126. (GTT)41214199261419937Coding
127. (TGAT)31214719521471963Coding
128. (CAG)41214756601475671Coding
129. (CTG)41214950891495100Coding
130. (GCA)41215163441516355Coding
131. (TTAA)31215171471517158Non coding
132. (ATAA)31215226791522690Coding-Non coding
133. (GTGATT)31815592181559235Coding
134. (TAAC)31215663311566342Coding
135. (AGC)51515724081572422Coding
136. (GCA)51515740921574106Coding
137. (AACC)31215804481580459Coding
138. (TAT)41215827831582794Coding
139. (TAGT)31215889401588951Coding
140. (AAAT)31216068061606817Non coding
141. (AATA)31216272191627230Non coding
142. (CAAT)41616305121630527Coding
143. (TGA)41216956621695673Coding
144. (TA)61216967231696734Non coding
145. (AGA)41216969161696927Coding
146. (AGAT)31216969331696944Coding
147. (CTG)41217148381714849Coding
148. (GTC)41217200211720032Coding
149. (TAAT)31217409691740980Non coding
150. (TTG)41217500401750051Coding
151. (GTT)51517520521752066Coding
152. (TCC)41217540051754016Coding
153. (ATGT)31217570991757110Non coding
154. (CAG)41217690681769079Coding
155. (GGTT)31217754871775498Coding
156. (TATT)31217808201780831Coding
157. (GAAATG)42417853421785365Coding
158. (ACC)41217908191790830Coding
159. (GCT)41218691831869194Coding
160. (ATTA)31218890061889017Coding-Non coding
161. (CTG)51519052521905266Coding
162. (AATA)31219208341920845Non coding
163. (CCA)41219437411943752Non coding
164. (AATA)31219450661945077Coding
165. (CAT)41219604141960425Coding
166. (AGAT)31219740571974068Non coding
167. (TAA)41219809361980947Coding
168. (AATT)31219809981981009Coding
169. (CTG)41220288712028882Coding
170. (TGC)41220341372034148Coding
171. (TGATT)31521010362101050Coding
172. (TTAT)31221108262110837Non coding
173. (TGG)41221300622130073Coding
174. (GCA)41221514572151468Coding
175. (TTGA)31221606582160669Coding
176. (AAC)41221714912171502Coding
177. (GCT)41221852412185252Coding
178. (CAGAAA)31822002532200270Coding
179. (TGC)41222089752208986Coding
180. (AATA)31222379752237986Coding
181. (TGGT)31222517802251791Coding
182. (ATG)41222756832275694Coding
183. (TAAT)31222791692279180Coding-Non coding
184. (AAAT)31222812772281288Non coding
185. (TAAA)31222832732283284Coding
186. (CAA)41222905282290539Coding
187. (CTC)41223200042320015Coding
188. (ACA)41223216722321683Non coding
189. (AATG)31223357682335779Coding
190. (TGC)41223847062384717Coding
191. (GTG)51524085692408583Coding
192. (TTAG)31224101312410142Non coding
193. (CAAAAT)31824329292432946Coding
194. (CAAC)31224348152434826Coding
195. (ATTT)31224425472442558Non coding
196. (TAAA)31224571462457157Non coding
197. (AATC)31224636452463656Coding
198. (TTAT)31224775432477554Coding
199. (TTAA)31224865692486580Non coding
200. (ACC)41224897102489721Coding
201. (AGC)41224975582497569Coding
202. (AAT)41225074852507496Non coding
203. (ATTT)31225223902522401Coding
204. (TTA)41225529582552969Coding-Non coding
205. (CAG)51525597622559776Coding
206. (TCG)61825835702583587Coding
207. (AACA)31225943182594329Coding
208. (TTAA)31225989792598990Non coding
209. (TTA)41226038102603821Non coding
210. (ATTA)31226229752622986Coding
211. (CCA)41226265322626543Coding
212. (TCAA)31226495992649610Coding
213. (AAG)51526609402660954Coding
214. (TAAC)31226671512667162Coding-Non coding
215. (GCT)41226696922669703Coding
216. (ATTT)31226705262670537Non coding
217. (AGC)41226770072677018Coding
218. (AATA)31226780802678091Non coding
219. (TGC)41226938332693844Coding
220. (TTG)41226993252699336Coding
221. (TAAT)31227094582709469Non coding
222. (ATT)41227253762725387Coding
223. (TTTA)31227459912746002Coding
224. (AAC)41227792252779236Non coding
225. (TTAT)31227892222789233Coding
226. (AGC)41227929792792990Coding
227. (TTA)41228015782801589Non coding
228. (GCTT)31228082432808254Coding
229. (TCA)51528096562809670Coding
230. (AAT)41228320542832065Coding
231. (GCA)61828591642859181Coding
232. (AGC)41228592712859282Coding
233. (AGTA)31228629452862956Coding
234. (TGC)41229070172907028Coding
235. (AATGGC)31829220742922091Coding
236. (GGA)41229267632926774Coding
237. (TCAA)31229686622968673Non coding
238. (AACT)31229951302995141Coding
239. (TTG)41230180713018082Coding
240. (AGAT)31230219473021958Coding
241. (GTT)41230320503032061Coding
242. (ATT)41230634583063469Coding
243. (TGC)51530651103065124Coding
244. (TTA)41230999283099939Coding
245. (TAAA)31231069213106932Non coding
246. (TCG)41231414513141462Coding
247. (CAC)41231455513145562Coding
248. (GGT)41231498493149860Coding
249. (TTG)41231503643150375Non coding
250. (GCT)41231539433153954Coding
251. (TAC)41231785733178584Coding
252. (GCTG)31231829233182934Coding
253. (TTAA)31231869253186936Coding-Non coding
254. (TAA)41231883473188358Coding
255. (GTT)41231962993196310Non coding
256. (TGCCGA)31832331863233203Coding
257. (TGACCA)31832380983238115Coding
258. (ATCA)31232490033249014Coding
259. (CAA)41232595993259610Coding
260. (CTTT)31232628453262856Coding
261. (TTAT)31232665563266567Non coding
262. (AAGA)31232954973295508Coding
263. (AATT)31233301263330137Non coding
264. (AGC)41233433663343377Coding
265. (TTG)51533551053355119Coding
266. (AGC)41233656293365640Coding
267. (TAAT)31233684353368446Non coding
268. (CTG)41233795443379555Coding
269. (AATT)31233842243384235Coding
270. (AATT)31233976223397633Non coding
271. (TAA)41234112453411256Coding
272. (TTGGG)31534118053411819Coding
273. (TAA)41234192813419292Coding
274. (ATT)41234210563421067Non coding
275. (TTAA)31234379183437929Coding-Non coding
276. (TTG)41234544863454497Coding
277. (CTAATC)31834783203478337Coding
278. (CTA)41235140093514020Coding
279. (ATT)41235753423575353Coding-Non coding
280. (TAAA)31235863533586364Coding
281. (TAAA)31235950713595082Coding
282. (ATTT)31236092443609255Coding
283. (CTTT)31236233413623352Non coding
284. (GTT)41236535173653528Coding
285. (ATTA)31236576673657678Non coding
286. (TTG)41236736933673704Coding
287. (AATC)31236755293675540Coding
288. (TAG)41236836503683661Coding
289. (CTG)51536846993684713Coding
290. (AGC)41236973493697360Coding
291. (ATT)41236976623697673Coding
292. (CAAA)31237019913702002Non coding
293. (AAATT)31537032303703244Coding
294. (AATT)31237155173715528Coding
295. (GTT)41237394053739416Coding
296. (AAT)41237421673742178Coding
297. (TAAA)31237431023743113Coding
298. (TGC)51537520173752031Coding
299. (ATTT)31237528283752839Coding
300. (CTT)41237711363771147Coding
301. (ATTG)31237715693771580Non coding
302. (CTG)41237808413780852Coding
303. (GCT)41237847293784740Coding
304. (CAG)51537853183785332Coding
305. (CAAC)31238282063828217Coding
306. (ACA)41238334753833486Coding
307. (GCT)41238445813844592Coding
308. (TTG)41238474803847491Non coding
309. (AAATA)31538764773876491Coding
310. (CTA)41238812643881275Coding
311. (AAC)41239026073902618Non coding
312. (TTAA)31239440233944034Non coding
313. (CGCT)31239979943998005Coding
314. (GTC)41239991833999194Coding
315. (ATT)41240143924014403Coding
316. (TGT)41240279594027970Coding
317. (CAT)41240644534064464Coding
318. (TCT)41240734164073427Coding
319. (AGC)41240776434077654Coding
320. (GTTT)31240807554080766Coding
321. (GCT)41240908684090879Coding
322. (TTG)41240980484098059Coding
323. (AAC)41240990404099051Coding
324. (TAA)41241070004107011Coding
325. (AATT)31241133514113362Coding
326. (TAAA)31241169854116996Coding
327. (AATT)31241170834117094Coding
328. (TTAA)31241254574125468Non coding
329. (TTTA)31241297254129736Coding
330. (CAA)41241654414165452Coding
331. (TTAA)31241704534170464Non coding
332. (TTAA)31241705414170552Coding-Non coding
333. (ATC)61841725194172536Coding
334. (TCT)41241726164172627Coding
335. (TTTAT)31542063004206314Coding-Non coding
336. (ATA)41242081234208134Coding
337. (TTG)41242115524211563Coding
338. (AGC)41242170964217107Coding
339. (ATT)41242283314228342Coding
340. (TAAA)31242427054242716Non coding
341. (TTTTTC)31842618834261900Non coding
342. (GGCAAT)42442709634270986Coding
343. (TGT)41242754864275497Coding
344. (TAA)41243095504309561Coding
345. (TCTA)31243249114324922Coding
346. (AATT)31243411284341139Coding
347. (AAC)41243468184346829Non coding
348. (AGC)41243497184349729Non coding
349. (ATG)41243524884352499Coding
350. (AGC)41243528074352818Coding
351. (CTG)41243948114394822Coding
352. (GTT)41244114044411415Coding
353. (GTTT)31244152434415254Coding
354. (ACG)41244270164427027Coding
355. (ATA)41244311154431126Coding
356. (TTGT)31244318074431818Non coding
357. (AGC)41244483644448375Coding
358. (AGC)51544539204453934Coding
359. (CAA)41244821904482201Coding
360. (TTG)41244840214484032Coding
361. (GCA)41244920224492033Coding
362. (TATT)31245096514509662Coding
363. (TTGT)31245198604519871Non coding
364. (AAC)41245484664548477Non coding
365. (AGC)41245513664551377Coding
366. (ATTT)31245744534574464Coding-Non coding
367. (CAC)41245847034584714Coding
368. (GTA)41245941174594128Coding
369. (AGT)51545948124594826Coding
370. (GTA)41245951524595163Coding
371. (GTA)41245954914595502Coding
372. (GTA)41245958304595841Coding
373. (AGTT)31246017354601746Non coding
374. (TTAT)31246070034607014Non coding
375. (GAA)41246116644611675Coding
376. (AATT)31246210604621071Coding
377. (CTA)41246285834628594Coding
378. (CCAA)31246369424636953Coding
379. (AATT)31246403994640410Coding
380. (AAACC)31546500324650046Coding
381. (TTA)41246596844659695Coding
382. (AAAT)31246762154676226Coding-Non coding
383. (ATT)51546846704684684Coding
384. (CAAT)31246975264697537Coding
385. (ATGG)31247069774706988Coding
386. (AGC)41247444924744503Coding
387. (TCA)41247451044745115Coding
388. (CTG)51547609184760932Coding
389. (AAATT)31547664684766482Coding
390. (GGTT)31247692834769294Coding
391. (CAA)41247714344771445Coding
392. (GCA)41247870714787082Coding
393. (AATT)31248081824808193Non coding
394. (AAT)41248225464822557Coding
395. (GCA)41248240384824049Coding
396. (TTAA)31248287904828801Non coding
397. (ATTT)31248324654832476Coding
398. (AGC)41248767864876797Coding
399. (TAAG)31248814374881448Non coding
400. (GGTT)31248821904882201Coding
401. (AGGTTT)31848955024895519Coding
402. (TTC)41249528694952880Coding
403. (TTG)41249633104963321Coding
404. (TAG)41249656624965673Coding
405. (TTAG)31250043055004316Non coding
406. (TTGA)31250208005020811Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.