CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Stanieria cyanosphaera PCC 7437 (NC_019748 5041210 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 406     Density of SSR      : 1SSR/ 12.39 kb   Average length of SSR  : 12.63 bp
Coding      : 313     Non-Coding           : 78   Coding and Non-Coding : 16
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 218 160 12 15 406
IMPERFECT 15 124 2507 1961 296 162 5065
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AGC)4121939019401Non coding
2. (AGC)4123890438915Coding
3. (TAA)4127311873129Coding
4. (ATT)4128582185832Non coding
5. (AGA)4129213592146Coding
6. (AGC)412112356112367Coding
7. (CTG)412138496138507Non coding
8. (ATT)412147206147217Coding
9. (AGT)412160907160918Coding
10. (ATC)412161748161759Coding
11. (AGA)412190918190929Non coding
12. (TAA)412201232201243Coding
13. (CTC)412204552204563Coding
14. (GAA)412217263217274Coding
15. (TCT)412256210256221Non coding
16. (TAA)515263683263697Coding
17. (CTG)412275320275331Coding
18. (AGC)412279544279555Coding
19. (TTG)412312349312360Coding
20. (AAG)412396901396912Coding
21. (GCT)515414780414794Coding
22. (GTC)412421692421703Coding
23. (CTA)412422990423001Coding
24. (ACC)412437531437542Coding
25. (ATT)412504753504764Coding
26. (GAA)412510636510647Coding
27. (TTG)412522048522059Coding
28. (TGC)412551223551234Coding
29. (TAA)412555224555235Non coding
30. (GCA)412562171562182Coding
31. (TAT)515586882586896Coding
32. (TAA)412619026619037Coding
33. (ATG)412620353620364Non coding
34. (CTT)412650617650628Coding
35. (TCA)412689769689780Coding
36. (GAA)412692555692566Coding
37. (TAA)412696522696533Coding
38. (CAT)412698806698817Coding
39. (ATT)412736583736594Coding
40. (GCT)412751144751155Coding
41. (TTG)412757590757601Coding
42. (CAA)412810323810334Coding
43. (TTA)412828263828274Coding
44. (TAG)412852569852580Coding
45. (AGC)412861985861996Coding
46. (CCA)412961685961696Coding
47. (TCT)41210414991041510Coding
48. (TAG)41210758001075811Coding
49. (ACA)41210809751080986Coding
50. (TTC)41210973391097350Coding
51. (CTG)41211224551122466Coding
52. (TTA)41211369111136922Coding
53. (GCA)41212200751220086Coding
54. (AGC)41212507741250785Coding
55. (TGC)41212565971256608Non coding
56. (TCA)41212674021267413Coding
57. (TCT)41212703801270391Coding
58. (AGC)41213590101359021Coding
59. (CAG)41213750551375066Coding
60. (GCA)41213770651377076Coding
61. (TGG)51513786241378638Coding
62. (ATT)41213846991384710Coding
63. (GAA)51514012081401222Coding
64. (GAA)41214015801401591Coding
65. (GTT)41214199261419937Coding
66. (CAG)41214756601475671Coding
67. (CTG)41214950891495100Coding
68. (GCA)41215163441516355Coding
69. (AGC)51515724081572422Coding
70. (GCA)51515740921574106Coding
71. (TAT)41215827831582794Coding
72. (TGA)41216956621695673Coding
73. (AGA)41216969161696927Coding
74. (CTG)41217148381714849Coding
75. (GTC)41217200211720032Coding
76. (TTG)41217500401750051Coding
77. (GTT)51517520521752066Coding
78. (TCC)41217540051754016Coding
79. (CAG)41217690681769079Coding
80. (ACC)41217908191790830Coding
81. (GCT)41218691831869194Coding
82. (CTG)51519052521905266Coding
83. (CCA)41219437411943752Non coding
84. (CAT)41219604141960425Coding
85. (TAA)41219809361980947Coding
86. (CTG)41220288712028882Coding
87. (TGC)41220341372034148Coding
88. (TGG)41221300622130073Coding
89. (GCA)41221514572151468Coding
90. (AAC)41221714912171502Coding
91. (GCT)41221852412185252Coding
92. (TGC)41222089752208986Coding
93. (ATG)41222756832275694Coding
94. (CAA)41222905282290539Coding
95. (CTC)41223200042320015Coding
96. (ACA)41223216722321683Non coding
97. (TGC)41223847062384717Coding
98. (GTG)51524085692408583Coding
99. (ACC)41224897102489721Coding
100. (AGC)41224975582497569Coding
101. (AAT)41225074852507496Non coding
102. (TTA)41225529582552969Coding-Non coding
103. (CAG)51525597622559776Coding
104. (TCG)61825835702583587Coding
105. (TTA)41226038102603821Non coding
106. (CCA)41226265322626543Coding
107. (AAG)51526609402660954Coding
108. (GCT)41226696922669703Coding
109. (AGC)41226770072677018Coding
110. (TGC)41226938332693844Coding
111. (TTG)41226993252699336Coding
112. (ATT)41227253762725387Coding
113. (AAC)41227792252779236Non coding
114. (AGC)41227929792792990Coding
115. (TTA)41228015782801589Non coding
116. (TCA)51528096562809670Coding
117. (AAT)41228320542832065Coding
118. (GCA)61828591642859181Coding
119. (AGC)41228592712859282Coding
120. (TGC)41229070172907028Coding
121. (GGA)41229267632926774Coding
122. (TTG)41230180713018082Coding
123. (GTT)41230320503032061Coding
124. (ATT)41230634583063469Coding
125. (TGC)51530651103065124Coding
126. (TTA)41230999283099939Coding
127. (TCG)41231414513141462Coding
128. (CAC)41231455513145562Coding
129. (GGT)41231498493149860Coding
130. (TTG)41231503643150375Non coding
131. (GCT)41231539433153954Coding
132. (TAC)41231785733178584Coding
133. (TAA)41231883473188358Coding
134. (GTT)41231962993196310Non coding
135. (CAA)41232595993259610Coding
136. (AGC)41233433663343377Coding
137. (TTG)51533551053355119Coding
138. (AGC)41233656293365640Coding
139. (CTG)41233795443379555Coding
140. (TAA)41234112453411256Coding
141. (TAA)41234192813419292Coding
142. (ATT)41234210563421067Non coding
143. (TTG)41234544863454497Coding
144. (CTA)41235140093514020Coding
145. (ATT)41235753423575353Coding-Non coding
146. (GTT)41236535173653528Coding
147. (TTG)41236736933673704Coding
148. (TAG)41236836503683661Coding
149. (CTG)51536846993684713Coding
150. (AGC)41236973493697360Coding
151. (ATT)41236976623697673Coding
152. (GTT)41237394053739416Coding
153. (AAT)41237421673742178Coding
154. (TGC)51537520173752031Coding
155. (CTT)41237711363771147Coding
156. (CTG)41237808413780852Coding
157. (GCT)41237847293784740Coding
158. (CAG)51537853183785332Coding
159. (ACA)41238334753833486Coding
160. (GCT)41238445813844592Coding
161. (TTG)41238474803847491Non coding
162. (CTA)41238812643881275Coding
163. (AAC)41239026073902618Non coding
164. (GTC)41239991833999194Coding
165. (ATT)41240143924014403Coding
166. (TGT)41240279594027970Coding
167. (CAT)41240644534064464Coding
168. (TCT)41240734164073427Coding
169. (AGC)41240776434077654Coding
170. (GCT)41240908684090879Coding
171. (TTG)41240980484098059Coding
172. (AAC)41240990404099051Coding
173. (TAA)41241070004107011Coding
174. (CAA)41241654414165452Coding
175. (ATC)61841725194172536Coding
176. (TCT)41241726164172627Coding
177. (ATA)41242081234208134Coding
178. (TTG)41242115524211563Coding
179. (AGC)41242170964217107Coding
180. (ATT)41242283314228342Coding
181. (TGT)41242754864275497Coding
182. (TAA)41243095504309561Coding
183. (AAC)41243468184346829Non coding
184. (AGC)41243497184349729Non coding
185. (ATG)41243524884352499Coding
186. (AGC)41243528074352818Coding
187. (CTG)41243948114394822Coding
188. (GTT)41244114044411415Coding
189. (ACG)41244270164427027Coding
190. (ATA)41244311154431126Coding
191. (AGC)41244483644448375Coding
192. (AGC)51544539204453934Coding
193. (CAA)41244821904482201Coding
194. (TTG)41244840214484032Coding
195. (GCA)41244920224492033Coding
196. (AAC)41245484664548477Non coding
197. (AGC)41245513664551377Coding
198. (CAC)41245847034584714Coding
199. (GTA)41245941174594128Coding
200. (AGT)51545948124594826Coding
201. (GTA)41245951524595163Coding
202. (GTA)41245954914595502Coding
203. (GTA)41245958304595841Coding
204. (GAA)41246116644611675Coding
205. (CTA)41246285834628594Coding
206. (TTA)41246596844659695Coding
207. (ATT)51546846704684684Coding
208. (AGC)41247444924744503Coding
209. (TCA)41247451044745115Coding
210. (CTG)51547609184760932Coding
211. (CAA)41247714344771445Coding
212. (GCA)41247870714787082Coding
213. (AAT)41248225464822557Coding
214. (GCA)41248240384824049Coding
215. (AGC)41248767864876797Coding
216. (TTC)41249528694952880Coding
217. (TTG)41249633104963321Coding
218. (TAG)41249656624965673Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.