CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Stanieria cyanosphaera PCC 7437 (NC_019748 5041210 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 406     Density of SSR      : 1SSR/ 12.39 kb   Average length of SSR  : 12.63 bp
Coding      : 313     Non-Coding           : 78   Coding and Non-Coding : 16
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 218 160 12 15 406
IMPERFECT 15 124 2507 1961 296 162 5065
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTA)3121431314324Coding
2. (AGAT)3122135421365Coding
3. (GATT)3124747047481Non coding
4. (AATT)3129298993000Coding
5. (AATT)312131571131582Coding
6. (TATT)312191841191852Coding
7. (AATT)312225246225257Coding
8. (AATT)312253836253847Coding
9. (GGTT)312261124261135Coding
10. (ATTT)312268410268421Non coding
11. (AACT)312299148299159Coding
12. (TTGA)312303717303728Coding
13. (TAAA)312305994306005Coding
14. (AACT)312387486387497Coding
15. (TAAT)312391899391910Coding
16. (AAAT)312416589416600Non coding
17. (AATA)312419984419995Non coding
18. (TATT)312423574423585Coding-Non coding
19. (AATG)312425534425545Non coding
20. (TTAA)312507200507211Non coding
21. (ATAA)312507364507375Non coding
22. (TTGG)312573215573226Coding
23. (AAAT)312622644622655Non coding
24. (TAAA)312630409630420Coding
25. (TTAA)312689630689641Coding
26. (ATAA)312715485715496Non coding
27. (CCAA)312771568771579Coding
28. (TAAT)312786977786988Coding-Non coding
29. (TTAA)312807760807771Coding-Non coding
30. (ATGA)312828487828498Coding
31. (TAAT)312849407849418Coding
32. (TTGA)312891655891666Coding
33. (TTCT)312899182899193Coding
34. (AATC)312961337961348Coding
35. (TTAG)31210174531017464Non coding
36. (AATA)31211035391103550Coding
37. (AAAT)31211147291114740Coding
38. (GTAA)31211382881138299Coding
39. (AAAT)31211383821138393Coding
40. (AAAT)31211393561139367Coding
41. (TTGA)41611543341154349Coding
42. (TTTA)31211555131155524Coding
43. (CAAA)31211599991160010Coding
44. (TACT)31211852611185272Non coding
45. (AATC)31211941221194133Coding
46. (TTTA)31212088831208894Coding
47. (AAAT)31212428661242877Coding
48. (AATT)31212793631279374Non coding
49. (CAAA)31213571601357171Non coding
50. (TTTA)31213651841365195Coding
51. (ACCA)31213806561380667Coding
52. (GGTT)31213845951384606Coding
53. (TGAT)31214719521471963Coding
54. (TTAA)31215171471517158Non coding
55. (ATAA)31215226791522690Coding-Non coding
56. (TAAC)31215663311566342Coding
57. (AACC)31215804481580459Coding
58. (TAGT)31215889401588951Coding
59. (AAAT)31216068061606817Non coding
60. (AATA)31216272191627230Non coding
61. (CAAT)41616305121630527Coding
62. (AGAT)31216969331696944Coding
63. (TAAT)31217409691740980Non coding
64. (ATGT)31217570991757110Non coding
65. (GGTT)31217754871775498Coding
66. (TATT)31217808201780831Coding
67. (ATTA)31218890061889017Coding-Non coding
68. (AATA)31219208341920845Non coding
69. (AATA)31219450661945077Coding
70. (AGAT)31219740571974068Non coding
71. (AATT)31219809981981009Coding
72. (TTAT)31221108262110837Non coding
73. (TTGA)31221606582160669Coding
74. (AATA)31222379752237986Coding
75. (TGGT)31222517802251791Coding
76. (TAAT)31222791692279180Coding-Non coding
77. (AAAT)31222812772281288Non coding
78. (TAAA)31222832732283284Coding
79. (AATG)31223357682335779Coding
80. (TTAG)31224101312410142Non coding
81. (CAAC)31224348152434826Coding
82. (ATTT)31224425472442558Non coding
83. (TAAA)31224571462457157Non coding
84. (AATC)31224636452463656Coding
85. (TTAT)31224775432477554Coding
86. (TTAA)31224865692486580Non coding
87. (ATTT)31225223902522401Coding
88. (AACA)31225943182594329Coding
89. (TTAA)31225989792598990Non coding
90. (ATTA)31226229752622986Coding
91. (TCAA)31226495992649610Coding
92. (TAAC)31226671512667162Coding-Non coding
93. (ATTT)31226705262670537Non coding
94. (AATA)31226780802678091Non coding
95. (TAAT)31227094582709469Non coding
96. (TTTA)31227459912746002Coding
97. (TTAT)31227892222789233Coding
98. (GCTT)31228082432808254Coding
99. (AGTA)31228629452862956Coding
100. (TCAA)31229686622968673Non coding
101. (AACT)31229951302995141Coding
102. (AGAT)31230219473021958Coding
103. (TAAA)31231069213106932Non coding
104. (GCTG)31231829233182934Coding
105. (TTAA)31231869253186936Coding-Non coding
106. (ATCA)31232490033249014Coding
107. (CTTT)31232628453262856Coding
108. (TTAT)31232665563266567Non coding
109. (AAGA)31232954973295508Coding
110. (AATT)31233301263330137Non coding
111. (TAAT)31233684353368446Non coding
112. (AATT)31233842243384235Coding
113. (AATT)31233976223397633Non coding
114. (TTAA)31234379183437929Coding-Non coding
115. (TAAA)31235863533586364Coding
116. (TAAA)31235950713595082Coding
117. (ATTT)31236092443609255Coding
118. (CTTT)31236233413623352Non coding
119. (ATTA)31236576673657678Non coding
120. (AATC)31236755293675540Coding
121. (CAAA)31237019913702002Non coding
122. (AATT)31237155173715528Coding
123. (TAAA)31237431023743113Coding
124. (ATTT)31237528283752839Coding
125. (ATTG)31237715693771580Non coding
126. (CAAC)31238282063828217Coding
127. (TTAA)31239440233944034Non coding
128. (CGCT)31239979943998005Coding
129. (GTTT)31240807554080766Coding
130. (AATT)31241133514113362Coding
131. (TAAA)31241169854116996Coding
132. (AATT)31241170834117094Coding
133. (TTAA)31241254574125468Non coding
134. (TTTA)31241297254129736Coding
135. (TTAA)31241704534170464Non coding
136. (TTAA)31241705414170552Coding-Non coding
137. (TAAA)31242427054242716Non coding
138. (TCTA)31243249114324922Coding
139. (AATT)31243411284341139Coding
140. (GTTT)31244152434415254Coding
141. (TTGT)31244318074431818Non coding
142. (TATT)31245096514509662Coding
143. (TTGT)31245198604519871Non coding
144. (ATTT)31245744534574464Coding-Non coding
145. (AGTT)31246017354601746Non coding
146. (TTAT)31246070034607014Non coding
147. (AATT)31246210604621071Coding
148. (CCAA)31246369424636953Coding
149. (AATT)31246403994640410Coding
150. (AAAT)31246762154676226Coding-Non coding
151. (CAAT)31246975264697537Coding
152. (ATGG)31247069774706988Coding
153. (GGTT)31247692834769294Coding
154. (AATT)31248081824808193Non coding
155. (TTAA)31248287904828801Non coding
156. (ATTT)31248324654832476Coding
157. (TAAG)31248814374881448Non coding
158. (GGTT)31248821904882201Coding
159. (TTAG)31250043055004316Non coding
160. (TTGA)31250208005020811Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.