CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus elongatus PCC 6301 (NC_006576 2696256 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 84     Density of SSR      : 1SSR/ 32.1 kb   Average length of SSR  : 12.37 bp
Coding      : 73     Non-Coding           : 10   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 48 30 5 1 84
IMPERFECT 1 52 937 614 51 45 1700
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCC)412112213112224Coding
2. (GGT)412134159134170Coding
3. (GATTT)315141547141561Non coding
4. (GCTG)416162763162778Non coding
5. (TTGG)312224302224313Coding
6. (TGA)412227212227223Coding
7. (GCGA)312239254239265Coding
8. (GCT)412254089254100Coding
9. (ATT)412310982310993Coding
10. (TTGG)312318075318086Coding
11. (CAG)412375148375159Coding
12. (GCG)412393113393124Coding
13. (TTTGG)315483702483716Coding
14. (GGC)412638776638787Coding
15. (TGAT)312668347668358Coding
16. (CGC)515734635734649Coding
17. (AGCA)312746347746358Coding
18. (AGC)412788774788785Coding
19. (GGCG)312812010812021Coding
20. (GCTG)312825856825867Coding
21. (ACCAG)315829589829603Coding
22. (CAGG)312850567850578Coding
23. (AGC)412883467883478Coding
24. (CTTA)312897707897718Non coding
25. (AAT)412897734897745Non coding
26. (CGCT)312924601924612Coding
27. (AAG)412968321968332Coding
28. (CGAT)31210578041057815Coding
29. (GCCA)31210820381082049Coding
30. (GCT)41211483141148325Coding
31. (GCA)41211876161187627Coding
32. (AGCG)31211993051199316Coding
33. (GCA)41212099731209984Coding
34. (TCT)41212174491217460Coding
35. (GAGT)31212451421245153Non coding
36. (CTGA)31212630361263047Coding
37. (TCGA)31212869781286989Non coding
38. (CAG)41213265251326536Coding
39. (AGC)41213405411340552Coding
40. (CGA)41213471801347191Coding
41. (GCT)41213870441387055Coding
42. (GCGATC)31813876591387676Coding
43. (TTC)41214227211422732Coding
44. (TGCC)31214287381428749Coding
45. (GCTG)31214578561457867Coding
46. (CAG)41214915251491536Non coding
47. (ATG)41215558581555869Coding
48. (TAA)41215649261564937Coding
49. (CAC)41215740211574032Coding
50. (GTC)41216187611618772Coding
51. (GCC)41216340451634056Coding
52. (GGC)41216402441640255Coding
53. (GAA)41216703381670349Coding
54. (CGG)41216801211680132Coding
55. (GCA)41216910261691037Coding
56. (GCCA)31217419331741944Coding
57. (GCT)41217843971784408Coding
58. (TGC)41218276831827694Coding
59. (GCTT)31218381211838132Coding
60. (GGC)41219108381910849Coding
61. (CTGG)31219515061951517Coding
62. (GTT)41219517881951799Coding
63. (GCA)41219581631958174Coding
64. (GGTT)31219723741972385Coding
65. (GGT)41219750711975082Coding
66. (TGG)41220106422010653Coding
67. (TAC)41221260142126025Coding
68. (CAT)41221308812130892Coding
69. (CAGT)31221396232139634Non coding
70. (CAG)41221431262143137Coding
71. (CGC)41221595882159599Coding
72. (TGC)41222395332239544Coding
73. (TGC)41222398482239859Coding
74. (CAGCT)31522767892276803Non coding
75. (GCCT)31223168322316843Coding-Non coding
76. (CCA)41223600022360013Coding
77. (GACG)31223671112367122Coding
78. (TCCA)31223808252380836Coding
79. (CGA)51524774972477511Coding
80. (GTCT)31225929162592927Coding
81. (GCTTG)31525991642599178Coding
82. (CCA)41226130442613055Coding
83. (AGCG)31226532912653302Non coding
84. (CGGT)31226754422675453Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.