CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus elongatus PCC 6301 (NC_006576 2696256 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 84     Density of SSR      : 1SSR/ 32.1 kb   Average length of SSR  : 12.37 bp
Coding      : 73     Non-Coding           : 10   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 48 30 5 1 84
IMPERFECT 1 52 937 614 51 45 1700
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCC)412112213112224Coding
2. (GGT)412134159134170Coding
3. (TGA)412227212227223Coding
4. (GCT)412254089254100Coding
5. (ATT)412310982310993Coding
6. (CAG)412375148375159Coding
7. (GCG)412393113393124Coding
8. (GGC)412638776638787Coding
9. (CGC)515734635734649Coding
10. (AGC)412788774788785Coding
11. (AGC)412883467883478Coding
12. (AAT)412897734897745Non coding
13. (AAG)412968321968332Coding
14. (GCT)41211483141148325Coding
15. (GCA)41211876161187627Coding
16. (GCA)41212099731209984Coding
17. (TCT)41212174491217460Coding
18. (CAG)41213265251326536Coding
19. (AGC)41213405411340552Coding
20. (CGA)41213471801347191Coding
21. (GCT)41213870441387055Coding
22. (TTC)41214227211422732Coding
23. (CAG)41214915251491536Non coding
24. (ATG)41215558581555869Coding
25. (TAA)41215649261564937Coding
26. (CAC)41215740211574032Coding
27. (GTC)41216187611618772Coding
28. (GCC)41216340451634056Coding
29. (GGC)41216402441640255Coding
30. (GAA)41216703381670349Coding
31. (CGG)41216801211680132Coding
32. (GCA)41216910261691037Coding
33. (GCT)41217843971784408Coding
34. (TGC)41218276831827694Coding
35. (GGC)41219108381910849Coding
36. (GTT)41219517881951799Coding
37. (GCA)41219581631958174Coding
38. (GGT)41219750711975082Coding
39. (TGG)41220106422010653Coding
40. (TAC)41221260142126025Coding
41. (CAT)41221308812130892Coding
42. (CAG)41221431262143137Coding
43. (CGC)41221595882159599Coding
44. (TGC)41222395332239544Coding
45. (TGC)41222398482239859Coding
46. (CCA)41223600022360013Coding
47. (CGA)51524774972477511Coding
48. (CCA)41226130442613055Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.