CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus elongatus PCC 6301 (NC_006576 2696256 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 84     Density of SSR      : 1SSR/ 32.1 kb   Average length of SSR  : 12.37 bp
Coding      : 73     Non-Coding           : 10   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 48 30 5 1 84
IMPERFECT 1 52 937 614 51 45 1700
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCTG)416162763162778Non coding
2. (TTGG)312224302224313Coding
3. (GCGA)312239254239265Coding
4. (TTGG)312318075318086Coding
5. (TGAT)312668347668358Coding
6. (AGCA)312746347746358Coding
7. (GGCG)312812010812021Coding
8. (GCTG)312825856825867Coding
9. (CAGG)312850567850578Coding
10. (CTTA)312897707897718Non coding
11. (CGCT)312924601924612Coding
12. (CGAT)31210578041057815Coding
13. (GCCA)31210820381082049Coding
14. (AGCG)31211993051199316Coding
15. (GAGT)31212451421245153Non coding
16. (CTGA)31212630361263047Coding
17. (TCGA)31212869781286989Non coding
18. (TGCC)31214287381428749Coding
19. (GCTG)31214578561457867Coding
20. (GCCA)31217419331741944Coding
21. (GCTT)31218381211838132Coding
22. (CTGG)31219515061951517Coding
23. (GGTT)31219723741972385Coding
24. (CAGT)31221396232139634Non coding
25. (GCCT)31223168322316843Coding-Non coding
26. (GACG)31223671112367122Coding
27. (TCCA)31223808252380836Coding
28. (GTCT)31225929162592927Coding
29. (AGCG)31226532912653302Non coding
30. (CGGT)31226754422675453Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.