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Organism:
Synechococcus elongatus PCC 7942
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(NC_007604 , 2695904 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
84
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Density of SSR
:
1SSR/
32.09
kb
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Average length of SSR
:
12.33
bp
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Coding
:
75
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Non-Coding
:
8
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Coding and Non-Coding
:
1
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REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
PERFECT
|
0
|
0
|
49
|
30
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4
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1
|
84
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|
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Perfect SSRs
S. No. | MOTIF | LENGTH | START | END | REGION |
1.
| (GAC)4 | 12 | 2111 | 2122 | Coding |
2.
| (GTG)4 | 12 | 46851 | 46862 | Coding |
3.
| (ATT)4 | 12 | 55945 | 55956 | Coding |
4.
| (CAT)4 | 12 | 65014 | 65025 | Coding |
5.
| (CTG)4 | 12 | 129346 | 129357 | Coding |
6.
| (CAGC)3 | 12 | 163016 | 163027 | Coding |
7.
| (GGCA)3 | 12 | 192134 | 192145 | Coding |
8.
| (AGA)4 | 12 | 198150 | 198161 | Coding |
9.
| (GATCGC)3 | 18 | 233209 | 233226 | Coding |
10.
| (GCA)4 | 12 | 233828 | 233839 | Coding |
11.
| (TCG)4 | 12 | 273692 | 273703 | Coding |
12.
| (GCT)4 | 12 | 280331 | 280342 | Coding |
13.
| (CTG)4 | 12 | 294346 | 294357 | Coding |
14.
| (TCGA)3 | 12 | 333893 | 333904 | Non coding |
15.
| (TCAG)3 | 12 | 357835 | 357846 | Coding |
16.
| (ACTC)3 | 12 | 375727 | 375738 | Non coding |
17.
| (GAA)4 | 12 | 403418 | 403429 | Coding |
18.
| (GCT)4 | 12 | 410894 | 410905 | Coding |
19.
| (CGCT)3 | 12 | 421564 | 421575 | Coding |
20.
| (GCT)4 | 12 | 433251 | 433262 | Coding |
21.
| (GCA)4 | 12 | 472553 | 472564 | Coding |
22.
| (GCTG)3 | 12 | 538828 | 538839 | Coding |
23.
| (ATCG)3 | 12 | 563064 | 563075 | Coding |
24.
| (CTT)4 | 12 | 652539 | 652550 | Coding |
25.
| (AGCG)3 | 12 | 696258 | 696269 | Coding |
26.
| (TAT)4 | 12 | 723125 | 723136 | Non coding |
27.
| (GTAA)3 | 12 | 723152 | 723163 | Non coding |
28.
| (GCT)4 | 12 | 737393 | 737404 | Coding |
29.
| (GCCT)3 | 12 | 770289 | 770300 | Coding |
30.
| (CTGGT)3 | 15 | 791267 | 791281 | Coding |
31.
| (CAGC)3 | 12 | 795003 | 795014 | Coding |
32.
| (CCGC)3 | 12 | 808846 | 808857 | Coding |
33.
| (GCT)4 | 12 | 832082 | 832093 | Coding |
34.
| (TGCT)3 | 12 | 874507 | 874518 | Coding |
35.
| (GGC)5 | 15 | 886215 | 886229 | Coding |
36.
| (AATC)3 | 12 | 952447 | 952458 | Coding |
37.
| (GCC)4 | 12 | 982019 | 982030 | Coding |
38.
| (CCAAA)3 | 15 | 1137088 | 1137102 | Coding |
39.
| (CCG)4 | 12 | 1227680 | 1227691 | Coding |
40.
| (CTG)4 | 12 | 1245646 | 1245657 | Coding |
41.
| (CCAA)3 | 12 | 1302717 | 1302728 | Coding |
42.
| (TAA)4 | 12 | 1309809 | 1309820 | Coding |
43.
| (AGC)4 | 12 | 1366701 | 1366712 | Coding |
44.
| (TCGC)3 | 12 | 1381535 | 1381546 | Coding |
45.
| (ATC)4 | 12 | 1393576 | 1393587 | Coding |
46.
| (CCAA)3 | 12 | 1396487 | 1396498 | Coding |
47.
| (CAGC)4 | 16 | 1458022 | 1458037 | Non coding |
48.
| (CAAAT)3 | 15 | 1479237 | 1479251 | Non coding |
49.
| (ACC)4 | 12 | 1486628 | 1486639 | Coding |
50.
| (GGC)4 | 12 | 1508573 | 1508584 | Coding |
51.
| (CCA)4 | 12 | 1515820 | 1515831 | Coding |
52.
| (AGCG)3 | 12 | 1556066 | 1556077 | Non coding |
53.
| (CGGT)3 | 12 | 1578217 | 1578228 | Coding |
54.
| (CAAGC)3 | 15 | 1717871 | 1717885 | Coding |
55.
| (AGAC)3 | 12 | 1724123 | 1724134 | Coding |
56.
| (GCT)4 | 12 | 1761897 | 1761908 | Coding |
57.
| (TCG)5 | 15 | 1839540 | 1839554 | Coding |
58.
| (TGGA)3 | 12 | 1936213 | 1936224 | Coding |
59.
| (TCCG)3 | 12 | 1949925 | 1949936 | Coding |
60.
| (GTG)4 | 12 | 1957035 | 1957046 | Coding |
61.
| (AGGC)3 | 12 | 2000194 | 2000205 | Coding-Non coding |
62.
| (AGC)4 | 12 | 2077170 | 2077181 | Coding |
63.
| (CAG)4 | 12 | 2077484 | 2077495 | Coding |
64.
| (GCG)4 | 12 | 2157433 | 2157444 | Coding |
65.
| (CTG)4 | 12 | 2173895 | 2173906 | Coding |
66.
| (ACTG)3 | 12 | 2177398 | 2177409 | Non coding |
67.
| (ATG)4 | 12 | 2186140 | 2186151 | Coding |
68.
| (GTA)4 | 12 | 2191006 | 2191017 | Coding |
69.
| (CCA)4 | 12 | 2306376 | 2306387 | Coding |
70.
| (CAC)4 | 12 | 2341945 | 2341956 | Coding |
71.
| (CCAA)3 | 12 | 2344641 | 2344652 | Coding |
72.
| (CTG)4 | 12 | 2358853 | 2358864 | Coding |
73.
| (AAC)4 | 12 | 2365229 | 2365240 | Coding |
74.
| (CCAG)3 | 12 | 2365511 | 2365522 | Coding |
75.
| (GCC)4 | 12 | 2406178 | 2406189 | Coding |
76.
| (AAGC)3 | 12 | 2478895 | 2478906 | Coding |
77.
| (GCA)4 | 12 | 2489333 | 2489344 | Coding |
78.
| (AGC)4 | 12 | 2532620 | 2532631 | Coding |
79.
| (TGGC)3 | 12 | 2574840 | 2574851 | Coding |
80.
| (TGC)4 | 12 | 2625749 | 2625760 | Coding |
81.
| (GCC)4 | 12 | 2636653 | 2636664 | Coding |
82.
| (TTC)4 | 12 | 2646437 | 2646448 | Coding |
83.
| (GCC)4 | 12 | 2676531 | 2676542 | Coding |
84.
| (GGC)4 | 12 | 2682730 | 2682741 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
Best viewed at 1280 x 768.
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