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Organism:
Synechococcus elongatus PCC 7942
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(NC_007604 , 2695904 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
84
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Density of SSR
:
1SSR/
32.09
kb
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Average length of SSR
:
12.33
bp
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Coding
:
75
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Non-Coding
:
8
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Coding and Non-Coding
:
1
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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0
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0
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49
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30
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4
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1
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84
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (GAC)4 | 12 | 2111 | 2122 | Coding |
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2.
| (GTG)4 | 12 | 46851 | 46862 | Coding |
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3.
| (ATT)4 | 12 | 55945 | 55956 | Coding |
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4.
| (CAT)4 | 12 | 65014 | 65025 | Coding |
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5.
| (CTG)4 | 12 | 129346 | 129357 | Coding |
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6.
| (CAGC)3 | 12 | 163016 | 163027 | Coding |
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7.
| (GGCA)3 | 12 | 192134 | 192145 | Coding |
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8.
| (AGA)4 | 12 | 198150 | 198161 | Coding |
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9.
| (GATCGC)3 | 18 | 233209 | 233226 | Coding |
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10.
| (GCA)4 | 12 | 233828 | 233839 | Coding |
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11.
| (TCG)4 | 12 | 273692 | 273703 | Coding |
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12.
| (GCT)4 | 12 | 280331 | 280342 | Coding |
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13.
| (CTG)4 | 12 | 294346 | 294357 | Coding |
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14.
| (TCGA)3 | 12 | 333893 | 333904 | Non coding |
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15.
| (TCAG)3 | 12 | 357835 | 357846 | Coding |
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16.
| (ACTC)3 | 12 | 375727 | 375738 | Non coding |
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17.
| (GAA)4 | 12 | 403418 | 403429 | Coding |
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18.
| (GCT)4 | 12 | 410894 | 410905 | Coding |
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19.
| (CGCT)3 | 12 | 421564 | 421575 | Coding |
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20.
| (GCT)4 | 12 | 433251 | 433262 | Coding |
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21.
| (GCA)4 | 12 | 472553 | 472564 | Coding |
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22.
| (GCTG)3 | 12 | 538828 | 538839 | Coding |
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23.
| (ATCG)3 | 12 | 563064 | 563075 | Coding |
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24.
| (CTT)4 | 12 | 652539 | 652550 | Coding |
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25.
| (AGCG)3 | 12 | 696258 | 696269 | Coding |
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26.
| (TAT)4 | 12 | 723125 | 723136 | Non coding |
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27.
| (GTAA)3 | 12 | 723152 | 723163 | Non coding |
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28.
| (GCT)4 | 12 | 737393 | 737404 | Coding |
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29.
| (GCCT)3 | 12 | 770289 | 770300 | Coding |
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30.
| (CTGGT)3 | 15 | 791267 | 791281 | Coding |
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31.
| (CAGC)3 | 12 | 795003 | 795014 | Coding |
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32.
| (CCGC)3 | 12 | 808846 | 808857 | Coding |
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33.
| (GCT)4 | 12 | 832082 | 832093 | Coding |
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34.
| (TGCT)3 | 12 | 874507 | 874518 | Coding |
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35.
| (GGC)5 | 15 | 886215 | 886229 | Coding |
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36.
| (AATC)3 | 12 | 952447 | 952458 | Coding |
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37.
| (GCC)4 | 12 | 982019 | 982030 | Coding |
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38.
| (CCAAA)3 | 15 | 1137088 | 1137102 | Coding |
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39.
| (CCG)4 | 12 | 1227680 | 1227691 | Coding |
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40.
| (CTG)4 | 12 | 1245646 | 1245657 | Coding |
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41.
| (CCAA)3 | 12 | 1302717 | 1302728 | Coding |
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42.
| (TAA)4 | 12 | 1309809 | 1309820 | Coding |
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43.
| (AGC)4 | 12 | 1366701 | 1366712 | Coding |
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44.
| (TCGC)3 | 12 | 1381535 | 1381546 | Coding |
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45.
| (ATC)4 | 12 | 1393576 | 1393587 | Coding |
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46.
| (CCAA)3 | 12 | 1396487 | 1396498 | Coding |
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47.
| (CAGC)4 | 16 | 1458022 | 1458037 | Non coding |
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48.
| (CAAAT)3 | 15 | 1479237 | 1479251 | Non coding |
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49.
| (ACC)4 | 12 | 1486628 | 1486639 | Coding |
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50.
| (GGC)4 | 12 | 1508573 | 1508584 | Coding |
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51.
| (CCA)4 | 12 | 1515820 | 1515831 | Coding |
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52.
| (AGCG)3 | 12 | 1556066 | 1556077 | Non coding |
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53.
| (CGGT)3 | 12 | 1578217 | 1578228 | Coding |
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54.
| (CAAGC)3 | 15 | 1717871 | 1717885 | Coding |
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55.
| (AGAC)3 | 12 | 1724123 | 1724134 | Coding |
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56.
| (GCT)4 | 12 | 1761897 | 1761908 | Coding |
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57.
| (TCG)5 | 15 | 1839540 | 1839554 | Coding |
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58.
| (TGGA)3 | 12 | 1936213 | 1936224 | Coding |
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59.
| (TCCG)3 | 12 | 1949925 | 1949936 | Coding |
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60.
| (GTG)4 | 12 | 1957035 | 1957046 | Coding |
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61.
| (AGGC)3 | 12 | 2000194 | 2000205 | Coding-Non coding |
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62.
| (AGC)4 | 12 | 2077170 | 2077181 | Coding |
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63.
| (CAG)4 | 12 | 2077484 | 2077495 | Coding |
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64.
| (GCG)4 | 12 | 2157433 | 2157444 | Coding |
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65.
| (CTG)4 | 12 | 2173895 | 2173906 | Coding |
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66.
| (ACTG)3 | 12 | 2177398 | 2177409 | Non coding |
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67.
| (ATG)4 | 12 | 2186140 | 2186151 | Coding |
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68.
| (GTA)4 | 12 | 2191006 | 2191017 | Coding |
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69.
| (CCA)4 | 12 | 2306376 | 2306387 | Coding |
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70.
| (CAC)4 | 12 | 2341945 | 2341956 | Coding |
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71.
| (CCAA)3 | 12 | 2344641 | 2344652 | Coding |
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72.
| (CTG)4 | 12 | 2358853 | 2358864 | Coding |
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73.
| (AAC)4 | 12 | 2365229 | 2365240 | Coding |
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74.
| (CCAG)3 | 12 | 2365511 | 2365522 | Coding |
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75.
| (GCC)4 | 12 | 2406178 | 2406189 | Coding |
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76.
| (AAGC)3 | 12 | 2478895 | 2478906 | Coding |
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77.
| (GCA)4 | 12 | 2489333 | 2489344 | Coding |
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78.
| (AGC)4 | 12 | 2532620 | 2532631 | Coding |
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79.
| (TGGC)3 | 12 | 2574840 | 2574851 | Coding |
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80.
| (TGC)4 | 12 | 2625749 | 2625760 | Coding |
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81.
| (GCC)4 | 12 | 2636653 | 2636664 | Coding |
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82.
| (TTC)4 | 12 | 2646437 | 2646448 | Coding |
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83.
| (GCC)4 | 12 | 2676531 | 2676542 | Coding |
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84.
| (GGC)4 | 12 | 2682730 | 2682741 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
Best viewed at 1280 x 768.
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