CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Synechococcus elongatus PCC 7942 (NC_007604 2695904 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 84     Density of SSR      : 1SSR/ 32.09 kb   Average length of SSR  : 12.33 bp
Coding      : 75     Non-Coding           : 8   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 49 30 4 1 84
IMPERFECT 0 48 928 605 65 53 1699
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GAC)41221112122Coding
2. (GTG)4124685146862Coding
3. (ATT)4125594555956Coding
4. (CAT)4126501465025Coding
5. (CTG)412129346129357Coding
6. (CAGC)312163016163027Coding
7. (GGCA)312192134192145Coding
8. (AGA)412198150198161Coding
9. (GATCGC)318233209233226Coding
10. (GCA)412233828233839Coding
11. (TCG)412273692273703Coding
12. (GCT)412280331280342Coding
13. (CTG)412294346294357Coding
14. (TCGA)312333893333904Non coding
15. (TCAG)312357835357846Coding
16. (ACTC)312375727375738Non coding
17. (GAA)412403418403429Coding
18. (GCT)412410894410905Coding
19. (CGCT)312421564421575Coding
20. (GCT)412433251433262Coding
21. (GCA)412472553472564Coding
22. (GCTG)312538828538839Coding
23. (ATCG)312563064563075Coding
24. (CTT)412652539652550Coding
25. (AGCG)312696258696269Coding
26. (TAT)412723125723136Non coding
27. (GTAA)312723152723163Non coding
28. (GCT)412737393737404Coding
29. (GCCT)312770289770300Coding
30. (CTGGT)315791267791281Coding
31. (CAGC)312795003795014Coding
32. (CCGC)312808846808857Coding
33. (GCT)412832082832093Coding
34. (TGCT)312874507874518Coding
35. (GGC)515886215886229Coding
36. (AATC)312952447952458Coding
37. (GCC)412982019982030Coding
38. (CCAAA)31511370881137102Coding
39. (CCG)41212276801227691Coding
40. (CTG)41212456461245657Coding
41. (CCAA)31213027171302728Coding
42. (TAA)41213098091309820Coding
43. (AGC)41213667011366712Coding
44. (TCGC)31213815351381546Coding
45. (ATC)41213935761393587Coding
46. (CCAA)31213964871396498Coding
47. (CAGC)41614580221458037Non coding
48. (CAAAT)31514792371479251Non coding
49. (ACC)41214866281486639Coding
50. (GGC)41215085731508584Coding
51. (CCA)41215158201515831Coding
52. (AGCG)31215560661556077Non coding
53. (CGGT)31215782171578228Coding
54. (CAAGC)31517178711717885Coding
55. (AGAC)31217241231724134Coding
56. (GCT)41217618971761908Coding
57. (TCG)51518395401839554Coding
58. (TGGA)31219362131936224Coding
59. (TCCG)31219499251949936Coding
60. (GTG)41219570351957046Coding
61. (AGGC)31220001942000205Coding-Non coding
62. (AGC)41220771702077181Coding
63. (CAG)41220774842077495Coding
64. (GCG)41221574332157444Coding
65. (CTG)41221738952173906Coding
66. (ACTG)31221773982177409Non coding
67. (ATG)41221861402186151Coding
68. (GTA)41221910062191017Coding
69. (CCA)41223063762306387Coding
70. (CAC)41223419452341956Coding
71. (CCAA)31223446412344652Coding
72. (CTG)41223588532358864Coding
73. (AAC)41223652292365240Coding
74. (CCAG)31223655112365522Coding
75. (GCC)41224061782406189Coding
76. (AAGC)31224788952478906Coding
77. (GCA)41224893332489344Coding
78. (AGC)41225326202532631Coding
79. (TGGC)31225748402574851Coding
80. (TGC)41226257492625760Coding
81. (GCC)41226366532636664Coding
82. (TTC)41226464372646448Coding
83. (GCC)41226765312676542Coding
84. (GGC)41226827302682741Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.