CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus elongatus PCC 7942 (NC_007604 2695904 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 84     Density of SSR      : 1SSR/ 32.09 kb   Average length of SSR  : 12.33 bp
Coding      : 75     Non-Coding           : 8   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 49 30 4 1 84
IMPERFECT 0 48 928 605 65 53 1699
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GAC)41221112122Coding
2. (GTG)4124685146862Coding
3. (ATT)4125594555956Coding
4. (CAT)4126501465025Coding
5. (CTG)412129346129357Coding
6. (AGA)412198150198161Coding
7. (GCA)412233828233839Coding
8. (TCG)412273692273703Coding
9. (GCT)412280331280342Coding
10. (CTG)412294346294357Coding
11. (GAA)412403418403429Coding
12. (GCT)412410894410905Coding
13. (GCT)412433251433262Coding
14. (GCA)412472553472564Coding
15. (CTT)412652539652550Coding
16. (TAT)412723125723136Non coding
17. (GCT)412737393737404Coding
18. (GCT)412832082832093Coding
19. (GGC)515886215886229Coding
20. (GCC)412982019982030Coding
21. (CCG)41212276801227691Coding
22. (CTG)41212456461245657Coding
23. (TAA)41213098091309820Coding
24. (AGC)41213667011366712Coding
25. (ATC)41213935761393587Coding
26. (ACC)41214866281486639Coding
27. (GGC)41215085731508584Coding
28. (CCA)41215158201515831Coding
29. (GCT)41217618971761908Coding
30. (TCG)51518395401839554Coding
31. (GTG)41219570351957046Coding
32. (AGC)41220771702077181Coding
33. (CAG)41220774842077495Coding
34. (GCG)41221574332157444Coding
35. (CTG)41221738952173906Coding
36. (ATG)41221861402186151Coding
37. (GTA)41221910062191017Coding
38. (CCA)41223063762306387Coding
39. (CAC)41223419452341956Coding
40. (CTG)41223588532358864Coding
41. (AAC)41223652292365240Coding
42. (GCC)41224061782406189Coding
43. (GCA)41224893332489344Coding
44. (AGC)41225326202532631Coding
45. (TGC)41226257492625760Coding
46. (GCC)41226366532636664Coding
47. (TTC)41226464372646448Coding
48. (GCC)41226765312676542Coding
49. (GGC)41226827302682741Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.