CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Synechococcus elongatus PCC 7942 (NC_007604 2695904 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 84     Density of SSR      : 1SSR/ 32.09 kb   Average length of SSR  : 12.33 bp
Coding      : 75     Non-Coding           : 8   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 49 30 4 1 84
IMPERFECT 0 48 928 605 65 53 1699
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAGC)312163016163027Coding
2. (GGCA)312192134192145Coding
3. (TCGA)312333893333904Non coding
4. (TCAG)312357835357846Coding
5. (ACTC)312375727375738Non coding
6. (CGCT)312421564421575Coding
7. (GCTG)312538828538839Coding
8. (ATCG)312563064563075Coding
9. (AGCG)312696258696269Coding
10. (GTAA)312723152723163Non coding
11. (GCCT)312770289770300Coding
12. (CAGC)312795003795014Coding
13. (CCGC)312808846808857Coding
14. (TGCT)312874507874518Coding
15. (AATC)312952447952458Coding
16. (CCAA)31213027171302728Coding
17. (TCGC)31213815351381546Coding
18. (CCAA)31213964871396498Coding
19. (CAGC)41614580221458037Non coding
20. (AGCG)31215560661556077Non coding
21. (CGGT)31215782171578228Coding
22. (AGAC)31217241231724134Coding
23. (TGGA)31219362131936224Coding
24. (TCCG)31219499251949936Coding
25. (AGGC)31220001942000205Coding-Non coding
26. (ACTG)31221773982177409Non coding
27. (CCAA)31223446412344652Coding
28. (CCAG)31223655112365522Coding
29. (AAGC)31224788952478906Coding
30. (TGGC)31225748402574851Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.